Evidence map›Paper›PMID 28008087›Full record

ArticleScience (New York, N.Y.)2017

Evolutionary drivers of thermoadaptation in enzyme catalysis.

Vy Nguyen, Christopher Wilson, Marc Hoemberger, John B Stiller, Roman V Agafonov, Steffen Kutter, Justin English, Douglas L Theobald, Dorothee Kern

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 207 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Article
  6. Article
  7. Epistatic drift in protein evolution.Current opinion in genetics & development · 2025
    Review
  8. Article
  9. Structural mechanisms for cold-adapted activity of phosphoenolpyruvate carboxykinase.Protein science : a publication of the Protein Society · 2025
    Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Vy NguyenHoward Hughes Medical Institute and Department of Biochemistry, Brandeis University, Waltham, MA 02452, USA.
Christopher WilsonHoward Hughes Medical Institute and Department of Biochemistry, Brandeis University, Waltham, MA 02452, USA.
Marc HoembergerHoward Hughes Medical Institute and Department of Biochemistry, Brandeis University, Waltham, MA 02452, USA.
John B StillerHoward Hughes Medical Institute and Department of Biochemistry, Brandeis University, Waltham, MA 02452, USA.
Roman V AgafonovHoward Hughes Medical Institute and Department of Biochemistry, Brandeis University, Waltham, MA 02452, USA.
Steffen KutterHoward Hughes Medical Institute and Department of Biochemistry, Brandeis University, Waltham, MA 02452, USA.
Justin EnglishHoward Hughes Medical Institute and Department of Biochemistry, Brandeis University, Waltham, MA 02452, USA.
Douglas L TheobaldDepartment of Biochemistry, Brandeis University, Waltham, MA 02452, USA.
Dorothee KernHoward Hughes Medical Institute and Department of Biochemistry, Brandeis University, Waltham, MA 02452, USA. dkern@brandeis.edu.
Howard Hughes Medical Institute · USBrandeis University · US

Funding

Macromolecular Structure MechanismT32GM007596 · NIGMS · BRANDEIS UNIVERSITY · PI OPRIAN, DANIEL D · 1985 to 2019
$4.5M
Evolution of enzyme structure and function viewed at atomic resolutionR01GM096053 · NIGMS · BRANDEIS UNIVERSITY · PI Douglas Lowell Theobald · 2011 to 2026
$3.6M
Bayesian analysis of structural shape and conformationR01GM094468 · NIGMS · BRANDEIS UNIVERSITY · PI THEOBALD, DOUGLAS LOWELL · 2010 to 2014
$1.4M
Collaborative experimental & computational studies of conformational transitionsR01GM100966 · NIGMS · BRANDEIS UNIVERSITY · PI HAGAN, MICHAEL F, KERN, DOROTHEE · 2013 to 2016
$1.2M
NIGMS NIH HHS R01 GM094468NIGMS NIH HHS R01 GM096053NIGMS NIH HHS R01 GM100966NIGMS NIH HHS T32 GM007596
6 · The paper itself

Abstract

With early life likely to have existed in a hot environment, enzymes had to cope with an inherent drop in catalytic speed caused by lowered temperature. Here we characterize the molecular mechanisms underlying thermoadaptation of enzyme catalysis in adenylate kinase using ancestral sequence reconstruction spanning 3 billion years of evolution. We show that evolution solved the enzyme's key kinetic obstacle-how to maintain catalytic speed on a cooler Earth-by exploiting transition-state heat capacity. Tracing the evolution of enzyme activity and stability from the hot-start toward modern hyperthermophilic, mesophilic, and psychrophilic organisms illustrates active pressure versus passive drift in evolution on a molecular level, refutes the debated activity/stability trade-off, and suggests that the catalytic speed of adenylate kinase is an evolutionary driver for organismal fitness.

Indexed as

BiocatalysisThermotoleranceAdenylyl CyclasesEvolution, MolecularHot TemperatureKineticsMutationPhylogenyAdenylyl Cyclases

Identifiers

PMID28008087
PMCPMC5649376
OpenAlexW2561072227

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.