Evidence map›Paper›PMID 28007980›Full record

ArticleMolecular biology and evolution2017

Archaic Adaptive Introgression in TBX15/WARS2.

Fernando Racimo, David Gokhman, Matteo Fumagalli, Amy Ko, Torben Hansen, Ida Moltke, Anders Albrechtsen, Liran Carmel, Emilia Huerta-Sánchez, Rasmus Nielsen

Open access · hybridAbstract read
In one paragraph

Article in Molecular biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 119 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Global impact of micronutrients in modern human evolution.American journal of human genetics · 2025
    Article
  6. Article
  7. TheScience (New York, N.Y.) · 2025
    Article
  8. Neanderthal adaptive introgression shapedProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Denisovan admixture facilitated environmental adaptation in Papua New Guinean populations.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Review
  18. The genetics of adipose tissue metabolism.Royal Society open science · 2024
    Article
  19. Archaic Introgression Shaped Human Circadian Traits.Genome biology and evolution · 2023
    Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Fernando RacimoDepartment of Integrative Biology, University of California Berkeley, Berkeley, CA.
David GokhmanDepartment of Genetics, The Alexander Silberman Institute of Life Sciences, Faculty of Science, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel.
Matteo FumagalliDepartment of Genetics, Evolution, and Environment, University College London, London, United Kingdom.
Amy KoDepartment of Integrative Biology, University of California Berkeley, Berkeley, CA.
Torben HansenThe Novo Nordisk Foundation Center for Basic Metabolic Research, Section of Metabolic Genetics, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Ida MoltkeThe Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Anders AlbrechtsenThe Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Liran CarmelDepartment of Genetics, The Alexander Silberman Institute of Life Sciences, Faculty of Science, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel.
Emilia Huerta-SánchezSchool of Natural Sciences, University of California Merced, Merced, CA.
Rasmus NielsenDepartment of Integrative Biology, University of California Berkeley, Berkeley, CA.
University of Copenhagen · DKHebrew University of Jerusalem · ILUniversity of California, Berkeley · USNovo Nordisk Foundation · DKUniversity College London · GBUniversity of California, Merced · US

Funding

Population Genetic Inferences From Dense Genotype DataR01HG003229 · NHGRI · CORNELL UNIVERSITY ITHACA · PI BUSTAMANTE, CARLOS DANIEL, CLARK, ANDREW G · 2004 to 2013
$4.8M
NHGRI NIH HHS R01 HG003229
6 · The paper itself

Abstract

A recent study conducted the first genome-wide scan for selection in Inuit from Greenland using single nucleotide polymorphism chip data. Here, we report that selection in the region with the second most extreme signal of positive selection in Greenlandic Inuit favored a deeply divergent haplotype that is closely related to the sequence in the Denisovan genome, and was likely introgressed from an archaic population. The region contains two genes, WARS2 and TBX15, and has previously been associated with adipose tissue differentiation and body-fat distribution in humans. We show that the adaptively introgressed allele has been under selection in a much larger geographic region than just Greenland. Furthermore, it is associated with changes in expression of WARS2 and TBX15 in multiple tissues including the adrenal gland and subcutaneous adipose tissue, and with regional DNA methylation changes in TBX15.

Indexed as

Adaptation, BiologicalAdipose TissueAllelesAnimalsDNA, AncientDNA MethylationGreenlandHaplotypesHumansInuitModels, GeneticNeanderthalsPolymorphism, Single NucleotideSelection, GeneticSequence Analysis, DNAT-Box Domain ProteinsDNA, AncientT-Box Domain ProteinsTBX15 protein, humanadaptive introgressionadmixture.DenisovamethylationNative Americanspositive selection

Identifiers

PMID28007980
PMCPMC5430617
OpenAlexW2951292100

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.