Evidence map›Paper›PMID 28007886›Full record

ArticleGenetics2017

Different Evolutionary Strategies To Conserve Chromatin Boundary Function in the Bithorax Complex.

Fabienne Cleard, Daniel Wolle, Andrew M Taverner, Tsutomu Aoki, Girish Deshpande, Peter Andolfatto, Francois Karch, Paul Schedl

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Mechanisms of Interaction between Enhancers and Promoters in ThreeInternational journal of molecular sciences · 2023
    Review
  3. Article
  4. Article
  5. The insulator functions of theScience advances · 2020
    Article
  6. Article
  7. Complete reconstitution of bypass and blocking functions in a minimal artificialProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Fabienne CleardDepartment of Genetics and Evolution, University of Geneva, Geneva 4, Switzerland.
Daniel WolleDepartment of Molecular Biology, Princeton University, New Jersey 08544.
Andrew M TavernerLewis-Sigler Institute for Integrative Genomics, Princeton University, New Jersey 08544.
Tsutomu AokiDepartment of Molecular Biology, Princeton University, New Jersey 08544.
Girish DeshpandeDepartment of Molecular Biology, Princeton University, New Jersey 08544.
Peter AndolfattoLewis-Sigler Institute for Integrative Genomics, Princeton University, New Jersey 08544.
Francois KarchDepartment of Genetics and Evolution, University of Geneva, Geneva 4, Switzerland.
Paul SchedlDepartment of Molecular Biology, Princeton University, New Jersey 08544 pschedl@princeton.edu.
Princeton University · USUniversity of Geneva · CH

Funding

Quantitavie and Computational Biology Graduate ProgramT32HG003284 · NHGRI · PRINCETON UNIVERSITY · PI Joshua Michael Akey, Stanislav Y. Shvartsman · 2004 to 2026
$9.9M
MOLECULAR AND GENETIC ANALYSIS OF CHROMATIN STRUCTURER01GM043432 · NIGMS · PRINCETON UNIVERSITY · PI SCHEDL, PAUL D · 1990 to 2017
$5.8M
Adaptive evolution of non coding DNA and gene expression divergence in DrosophilaR01GM083228 · NIGMS · PRINCETON UNIVERSITY · PI ANDOLFATTO, PETER · 2009 to 2013
$1.5M
Molecular and Genetic Analysis of Chromatin StructureR56GM043432 · NIGMS · PRINCETON UNIVERSITY · PI SCHEDL, PAUL D · 2008 to 2008
$389k
NHGRI NIH HHS T32 HG003284NIGMS NIH HHS R01 GM043432NIGMS NIH HHS R01 GM083228NIGMS NIH HHS R56 GM043432
6 · The paper itself

Abstract

Chromatin boundary elements subdivide chromosomes in multicellular organisms into physically independent domains. In addition to this architectural function, these elements also play a critical role in gene regulation. Here we investigated the evolution of a Drosophila Bithorax complex boundary element called Fab-7, which is required for the proper parasegment specific expression of the homeotic Abd-B gene. Using a "gene" replacement strategy, we show that Fab-7 boundaries from two closely related species, D. erecta and D. yakuba, and a more distant species, D. pseudoobscura, are able to substitute for the melanogaster boundary. Consistent with this functional conservation, the two known Fab-7 boundary factors, Elba and LBC, have recognition sequences in the boundaries from all species. However, the strategies used for maintaining binding and function in the face of sequence divergence is different. The first is conventional, and depends upon conservation of the 8 bp Elba recognition sequence. The second is unconventional, and takes advantage of the unusually large and flexible sequence recognition properties of the LBC boundary factor, and the deployment of multiple LBC recognition elements in each boundary. In the former case, binding is lost when the recognition sequence is altered. In the latter case, sequence divergence is accompanied by changes in the number, relative affinity, and location of the LBC recognition elements.

Indexed as

Evolution, MolecularInsulator ElementsAnimalsChromatinConserved SequenceDrosophilaDrosophila ProteinsTranscription FactorsChromatinDrosophila ProteinsTranscription Factorsboundary elementconservation of functionDNA binding proteinsevolutioninsulator

Identifiers

PMID28007886
PMCPMC5289839
OpenAlexW2561377413

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.