Evidence map›Paper›PMID 28007623›Full record

ArticleJournal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer2017

Small Cell Lung Cancer Exhibits Frequent Inactivating Mutations in the Histone Methyltransferase KMT2D/MLL2: CALGB 151111 (Alliance).

Arnaud Augert, Qing Zhang, Breanna Bates, Min Cui, Xiaofei Wang, Gary Wildey, Afshin Dowlati, David MacPherson

Open access · greenAbstract read
In one paragraph

Article in Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 1 synthesis or guideline pooled it, 125 citations in OpenAlex.

  1. Pooled it
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  10. In vivo functional screens revealScience advances · 2025
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  15. SomaticJournal of thoracic disease · 2024
    Article
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  17. Article
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  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Arnaud AugertDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington; Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Qing ZhangGenomics and Bioinformatics Shared Resource, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Breanna BatesDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington; Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Min CuiCarnegie Institution, Department of Embryology, Baltimore, Maryland.
Xiaofei WangDuke University School of Medicine and Alliance Data and Statistical Center, Durham, North Carolina.
Gary WildeyCase Western Reserve Medical School, Division of Hematology and Oncology, Cleveland, Ohio.
Afshin DowlatiCase Western Reserve Medical School, Division of Hematology and Oncology, Cleveland, Ohio.
David MacPhersonDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington; Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington; Genomics and Bioinformatics Shared Resource, Fred Hutchinson Cancer Research Center, Seattle, Washington; Department of Genome Sciences, University of Washington, Seattle, Washington. Electronic address: dmacpher@fhcrc.org.
Fred Hutch Cancer Center · USCase Western Reserve University · USAlliance Data (United States) · USDepartment of Embryology · USUniversity of Washington · US

Funding

Member Site CoreU10CA180821 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI Evanthia Galanis · 2014 to 2026
$177.3M
Statistics CoreU10CA180882 · NCI · MAYO CLINIC ROCHESTER · PI Sumithra Jay Mandrekar · 2014 to 2026
$115.0M
THE ALLIANCE NCTN BIOREPOSITORY AND BIOSPECIMEN RESOURCEU24CA196171 · NCI · WASHINGTON UNIVERSITY · PI Mine Cicek, Wendy Frankel · 2015 to 2026
$35.0M
Investigating CREBBP as a tumor suppressor in small cell lung cancerR01CA200547 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MACPHERSON, DAVID · 2017 to 2021
$2.2M
Interrogation of MLL2 as a tumor suppressor gene in lung cancerR01CA181449 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MACPHERSON, DAVID · 2015 to 2019
$2.0M
Using mouse models to understand retinoblastoma initiation and progressionR01CA148867 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MACPHERSON, DAVID · 2010 to 2014
$1.6M
NCI NIH HHS R01 CA148867NCI NIH HHS R01 CA181449NCI NIH HHS R01 CA200547NCI NIH HHS U10 CA180821NCI NIH HHS U10 CA180882NCI NIH HHS U24 CA196171
6 · The paper itself

Abstract

introductionSCLC is a lethal neuroendocrine tumor type that is highly prone to metastasis. There is an urgency to understand the mutated genes that promote SCLC, as there are no approved targeted therapies yet available. SCLC is rarely resected, limiting the number of samples available for genomic analyses of somatic mutations.

methodsTo identify potential driver mutations in human SCLC we sequenced the whole exomes of 18 primary SCLCs and seven cell lines along with matched normal controls. We extended these data by resequencing a panel of genes across 40 primary SCLCs and 48 cell lines.

resultsWe report frequent mutations in the lysine methyltransferase 2D gene (KMT2D) (also known as MLL2), a key regulator of transcriptional enhancer function. KMT2D exhibited truncating nonsense/frameshift/splice site mutations in 8% of SCLC tumors and 17% of SCLC cell lines. We found that KMT2D mutation in human SCLC cell lines was associated with reduced lysine methyltransferase 2D protein levels and reduced monomethylation of histone H3 lysine 4, a mark associated with transcriptional enhancers. We also found mutations in other genes associated with transcriptional enhancer control, including CREB binding protein gene (CREBBP), E1A binding protein p300 gene (EP300), and chromodomain helicase DNA binding protein 7 gene (CHD7), and we report mutations in additional chromatin remodeling genes such as polybromo 1 gene (PBRM1).

conclusionsThese data indicate that KMT2D is one of the major mutated genes in SCLC, and they point to perturbation of transcriptional enhancer control as potentially contributing to SCLC.

Indexed as

Biomarkers, TumorCase-Control StudiesDNA-Binding ProteinsExomeFollow-Up StudiesGene Expression ProfilingHigh-Throughput Nucleotide SequencingHumansLung NeoplasmsNeoplasm ProteinsNeoplasm StagingPrognosisSmall Cell Lung CarcinomaBiomarkers, TumorDNA-Binding ProteinsKMT2D protein, humanNeoplasm ProteinsGenomicsKMT2DMLL2SCLCSmall cell lung cancer

Identifiers

PMID28007623
PMCPMC5669801
OpenAlexW2567628222

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.