Evidence map›Paper›PMID 28005463›Full record

ArticleTranscription2017

CDK regulation of transcription by RNAP II: Not over 'til it's over?

Robert P Fisher

Open access · bronzeAbstract read
In one paragraph

Article in Transcription, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.3field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Cyclin-dependent kinases: Masters of the eukaryotic universe.Wiley interdisciplinary reviews. RNA · 2023
    Review
  3. Article
  4. MYC: a complex problem.Trends in cell biology · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Robert P Fishera Department of Oncological Sciences , Icahn School of Medicine at Mount Sinai , New York , NY , USA.
Icahn School of Medicine at Mount Sinai · US

Funding

Chemical Genetics of Transcriptional Regulation by CDKs in Human CellsR01GM104291 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI FISHER, ROBERT P · 2014 to 2017
$1.3M
NIGMS NIH HHS R01 GM104291
6 · The paper itself

Abstract

Transcription by RNA polymerase (RNAP) II is regulated at multiple steps by phosphorylation, catalyzed mainly by members of the cyclin-dependent kinase (CDK) family. The CDKs involved in transcription have overlapping substrate specificities, but play largely non-redundant roles in coordinating gene expression. Novel functions and targets of CDKs have recently emerged at the end of the transcription cycle, when the primary transcript is cleaved, and in most cases polyadenylated, and transcription is terminated by the action of the "torpedo" exonuclease Xrn2, which is a CDK substrate. Collectively, various functions have been ascribed to CDKs or CDK-mediated phosphorylation: recruiting cleavage and polyadenylation factors, preventing premature termination within gene bodies while promoting efficient termination of full-length transcripts, and preventing extensive readthrough transcription into intergenic regions or neighboring genes. The assignment of precise functions to specific CDKs is still in progress, but recent advances suggest ways in which the CDK network and RNAP II machinery might cooperate to ensure timely exit from the transcription cycle.

Indexed as

Cyclin-Dependent KinasesExoribonucleasesHumansmRNA Cleavage and Polyadenylation FactorsPhosphorylationPositive Transcriptional Elongation Factor BRNA 3' Polyadenylation SignalsRNA InterferenceRNA Polymerase IIRNA, Small InterferingTranscription, GeneticTranscription Termination, GeneticCyclin-Dependent KinasesExoribonucleasesmRNA Cleavage and Polyadenylation FactorsPositive Transcriptional Elongation Factor BRNA Polymerase IIRNA, Small InterferingXRN2 protein, humanC-terminal domain; cleavage and polyadenylation; Cyclin-dependent kinase; positive transcription elongation factor b; protein phosphorylation; RNA polymerase II; RNA processing; transcription termination; Xrn2

Identifiers

PMID28005463
PMCPMC5423476
OpenAlexW2565208143

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.