Evidence map›Paper›PMID 28005462›Full record

ArticleNucleic acid therapeutics2017

Recognition of c9orf72 Mutant RNA by Single-Stranded Silencing RNAs.

Jiaxin Hu, Frank Rigo, Thazha P Prakash, David R Corey

Open access · greenAbstract read
In one paragraph

Article in Nucleic acid therapeutics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
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  14. Gene therapy for ALS: A review.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Review
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  16. Inducible expression of humanDisease models & mechanisms · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jiaxin Hu1 Department of Pharmacology, UT Southwestern Medical Center at Dallas , Dallas, Texas.
Frank Rigo3 Ionis Pharmaceuticals , Carlsbad, California.
Thazha P Prakash3 Ionis Pharmaceuticals , Carlsbad, California.
David R Corey1 Department of Pharmacology, UT Southwestern Medical Center at Dallas , Dallas, Texas.
Ionis Pharmaceuticals (United States) · USSouthwestern Medical Center · US

Funding

Recognition of Cellular Targets by single and double-stranded nucleic acidsR35GM118103 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI David R Corey · 2016 to 2026
$5.7M
NIGMS NIH HHS R35 GM118103
6 · The paper itself

Abstract

Mutations within the chromosome 9 open reading frame 72 (c9orf72) gene are associated with both familial amyotrophic lateral sclerosis and frontotemporal dementia. The mutation leads to an expanded GGGGCC hexanucleotide repeat within the first intron of c9orf72 and an expanded CCCCGG repeat within a corresponding antisense transcript. Both the mutant intronic and antisense RNAs have been implicated in disease. We have previously reported that duplex RNAs complementary to the repeats can recognize disease-causing RNA and block detection of nuclear foci formed by the mutant transcripts. Here, we test the hypothesis that inhibition can also be achieved by single-stranded silencing RNAs (ss-siRNAs). ss-siRNAs are single-stranded antisense oligonucleotides (ASOs) that function through RNAi interference (RNAi) to silence gene expression. ss-siRNAs can block the expanded repeats within both intronic RNA and the antisense transcripts. Inhibition is more potent than by analogous duplex RNAs. Our data suggest that the potent effects on foci are caused by a combination of mechanisms including RNAi and direct binding of the ss-siRNA to the target transcripts. These findings reinforce the suggestion that ss-siRNAs combine the favorable properties of duplex RNA and single-stranded ASOs.

Indexed as

MutationRNA InterferenceAmyotrophic Lateral SclerosisC9orf72 ProteinDNA Repeat ExpansionFibroblastsFrontotemporal DementiaGene ExpressionHumansIntronsNucleotide MotifsOligonucleotides, AntisensePrimary Cell CultureProteinsReal-Time Polymerase Chain ReactionRNA, MessengerC9orf72 ProteinC9orf72 protein, humanOligonucleotides, AntisenseProteinsRNA, MessengerRNA, Small Interferingantisense oligonucleotidec9orf72RNA interferencesingle-strand silencing RNA

Identifiers

PMID28005462
PMCPMC5372765
OpenAlexW2561091956

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.