Evidence map›Paper›PMID 28004831›Full record

ArticleScientific reports2016

An Adaptation To Life In Acid Through A Novel Mevalonate Pathway.

Jeffrey M Vinokur, Matthew C Cummins, Tyler P Korman, James U Bowie

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Enhanced isoprenoid production inBiochemistry and biophysics reports · 2025
    Article
  2. Article
  3. Archaeal mevalonate pathway in the uncultured bacteriumApplied and environmental microbiology · 2024
    Article
  4. International journal of systematic and evolutionary microbiology · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. ACS chemical biology · 2022
    Article
  11. Genomic Insights into the Ecological Role and Evolution of a NovelApplied and environmental microbiology · 2021
    Article
  12. Article
  13. Article
  14. Frontiers in cellular and infection microbiology · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Modified mevalonate pathway of the archaeonProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Archaeal cell surface biogenesis.FEMS microbiology reviews · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jeffrey M VinokurDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA.
Matthew C CumminsDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA.
Tyler P KormanDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA.
James U BowieDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extreme acidophiles are capable of growth at pH values near zero. Sustaining life in acidic environments requires extensive adaptations of membranes, proton pumps, and DNA repair mechanisms. Here we describe an adaptation of a core biochemical pathway, the mevalonate pathway, in extreme acidophiles. Two previously known mevalonate pathways involve ATP dependent decarboxylation of either mevalonate 5-phosphate or mevalonate 5-pyrophosphate, in which a single enzyme carries out two essential steps: (1) phosphorylation of the mevalonate moiety at the 3-OH position and (2) subsequent decarboxylation. We now demonstrate that in extreme acidophiles, decarboxylation is carried out by two separate steps: previously identified enzymes generate mevalonate 3,5-bisphosphate and a new decarboxylase we describe here, mevalonate 3,5-bisphosphate decarboxylase, produces isopentenyl phosphate. Why use two enzymes in acidophiles when one enzyme provides both functionalities in all other organisms examined to date? We find that at low pH, the dual function enzyme, mevalonate 5-phosphate decarboxylase is unable to carry out the first phosphorylation step, yet retains its ability to perform decarboxylation. We therefore propose that extreme acidophiles had to replace the dual-purpose enzyme with two specialized enzymes to efficiently produce isoprenoids in extremely acidic environments.

Indexed as

Adaptation, BiologicalHydrogen-Ion ConcentrationMevalonic AcidThermoplasmaMevalonic Acid

Identifiers

PMID28004831
PMCPMC5177888

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.