Evidence map›Paper›PMID 28004753›Full record

ArticleNature communications2016

Proximity does not contribute to activity enhancement in the glucose oxidase-horseradish peroxidase cascade.

Yifei Zhang, Stanislav Tsitkov, Henry Hess

Abstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed.

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  20. Acid-resistant enzymes: the acquisition strategies and applications.Applied microbiology and biotechnology · 2023
    Review

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yifei ZhangDepartment of Biomedical Engineering, Columbia University, New York, New York 10027, USA.
Stanislav TsitkovDepartment of Biomedical Engineering, Columbia University, New York, New York 10027, USA.
Henry HessDepartment of Biomedical Engineering, Columbia University, New York, New York 10027, USA.ORCID 0000-0002-5617-606X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A proximity effect has been invoked to explain the enhanced activity of enzyme cascades on DNA scaffolds. Using the cascade reaction carried out by glucose oxidase and horseradish peroxidase as a model system, here we study the kinetics of the cascade reaction when the enzymes are free in solution, when they are conjugated to each other and when a competing enzyme is present. No proximity effect is found, which is in agreement with models predicting that the rapidly diffusing hydrogen peroxide intermediate is well mixed. We suggest that the reason for the activity enhancement of enzymes localized by DNA scaffolds is that the pH near the surface of the negatively charged DNA nanostructures is lower than that in the bulk solution, creating a more optimal pH environment for the anchored enzymes. Our findings challenge the notion of a proximity effect and provide new insights into the role of DNA scaffolds.

Indexed as

CatalysisDNAEnzymes, ImmobilizedGlucose OxidaseHorseradish PeroxidaseHydrogen-Ion ConcentrationKineticsModels, BiologicalModels, MolecularNanostructuresNanotechnologyDNAEnzymes, ImmobilizedGlucose OxidaseHorseradish Peroxidase

Identifiers

PMID28004753
PMCPMC5196434

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.