Evidence map›Paper›PMID 28003473›Full record

ArticleOpen biology2016

Primase is required for helicase activity and helicase alters the specificity of primase in the enteropathogen Clostridium difficile.

Erika van Eijk, Vasileios Paschalis, Matthew Green, Annemieke H Friggen, Marilynn A Larson, Keith Spriggs, Geoffrey S Briggs, Panos Soultanas, Wiep Klaas Smits

Open access · goldAbstract read
In one paragraph

Article in Open biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Analysis of essential genes inJournal of bacteriology · 2025
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  3. Analysis of Essential Genes inbioRxiv : the preprint server for biology · 2025
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  9. Identification of the Unwinding Region in theFrontiers in microbiology · 2020
    Article
  10. Article
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  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Erika van EijkDepartment of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands.
Vasileios PaschalisSchool of Chemistry, Center for Biomolecular Sciences, University of Nottingham, UK.ORCID 0000-0003-2757-6918
Matthew GreenSchool of Chemistry, Center for Biomolecular Sciences, University of Nottingham, UK.ORCID 0000-0003-2771-9894
Annemieke H FriggenDepartment of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands.
Marilynn A LarsonDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE 68198-5900, USA.ORCID 0000-0002-0633-0313
Keith SpriggsSchool of Pharmacy, University of Nottingham, UK.ORCID 0000-0001-5946-1440
Geoffrey S BriggsSchool of Chemistry, Center for Biomolecular Sciences, University of Nottingham, UK.ORCID 0000-0002-4149-8752
Panos SoultanasSchool of Chemistry, Center for Biomolecular Sciences, University of Nottingham, UK.ORCID 0000-0003-3578-5699
Wiep Klaas SmitsDepartment of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands w.k.smits@lumc.nl.ORCID 0000-0002-7409-2847
University of Nottingham · GBLeiden University Medical Center · NLStrategic Analysis (United States) · US

Funding

Biotechnology and Biological Sciences Research Council BB/K021540/1
6 · The paper itself

Abstract

DNA replication is an essential and conserved process in all domains of life and may serve as a target for the development of new antimicrobials. However, such developments are hindered by subtle mechanistic differences and limited understanding of DNA replication in pathogenic microorganisms. Clostridium difficile is the main cause of healthcare-associated diarrhoea and its DNA replication machinery is virtually uncharacterized. We identify and characterize the mechanistic details of the putative replicative helicase (CD3657), helicase-loader ATPase (CD3654) and primase (CD1454) of C. difficile, and reconstitute helicase and primase activities in vitro We demonstrate a direct and ATP-dependent interaction between the helicase loader and the helicase. Furthermore, we find that helicase activity is dependent on the presence of primase in vitro The inherent trinucleotide specificity of primase is determined by a single lysine residue and is similar to the primase of the extreme thermophile Aquifex aeolicus. However, the presence of helicase allows more efficient de novo synthesis of RNA primers from non-preferred trinucleotides. Thus, loader-helicase-primase interactions, which crucially mediate helicase loading and activation during DNA replication in all organisms, differ critically in C. difficile from that of the well-studied Gram-positive Bacillus subtilis model.

Indexed as

DNA ReplicationAdenosine TriphosphateBacterial ProteinsClostridioides difficileComputer SimulationDNA, BacterialDNA HelicasesDNA PrimaseMutationProtein BindingAdenosine TriphosphateBacterial ProteinsDNA, BacterialDNA HelicasesDNA PrimaseATPaseClostridium difficileDNA replication initiationhelicase loading and activationprimase trinucleotide specificity

Identifiers

PMID28003473
PMCPMC5204125
OpenAlexW2562958038

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.