Evidence map›Paper›PMID 28003446›Full record

ArticleProceedings. Biological sciences2016

Transcriptional regulation of a horizontally transferred gene from bacterium to chordate.

Yasunori Sasakura, Yosuke Ogura, Nicholas Treen, Rui Yokomori, Sung-Joon Park, Kenta Nakai, Hidetoshi Saiga, Tetsushi Sakuma, Takashi Yamamoto, Shigeki Fujiwara and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings. Biological sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Collective effects of cell cleavage dynamics.Frontiers in cell and developmental biology · 2024
    Review
  5. Article
  6. The Genome of the "Sea Vomit"Life (Basel, Switzerland) · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Yasunori SasakuraShimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka 415-0025, Japan sasakura@shimoda.tsukuba.ac.jp.ORCID 0000-0001-7161-8367
Yosuke OguraShimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka 415-0025, Japan.
Nicholas TreenShimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka 415-0025, Japan.
Rui YokomoriThe Institute of Medical Sciences, University of Tokyo, Tokyo 108-8639, Japan.
Sung-Joon ParkThe Institute of Medical Sciences, University of Tokyo, Tokyo 108-8639, Japan.
Kenta NakaiThe Institute of Medical Sciences, University of Tokyo, Tokyo 108-8639, Japan.
Hidetoshi SaigaDepartment of Biological Sciences, Graduate School of Science and Engineering, Tokyo Metropolitan University, 1-1 Minamiohsawa, Hachioji, Tokyo 192-0397, Japan.
Tetsushi SakumaDepartment of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8526, Japan.
Takashi YamamotoDepartment of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8526, Japan.
Shigeki FujiwaraDepartment of Applied Science, Kochi University, 2-5-1, Akebono-cho, Kochi-shi, Kochi 780-8520, Japan.
Keita YoshidaShimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka 415-0025, Japan.
University of Tsukuba · JPThe University of Tokyo · JPHiroshima University · JPAkebono (Japan) · JPTokyo Metropolitan University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The horizontal transfer of genes between distantly related organisms is undoubtedly a major factor in the evolution of novel traits. Because genes are functionless without expression, horizontally transferred genes must acquire appropriate transcriptional regulations in their recipient organisms, although the evolutionary mechanism is not known well. The defining characteristic of tunicates is the presence of a cellulose containing tunic covering the adult and larval body surface. Cellulose synthase was acquired by horizontal gene transfer from Actinobacteria. We found that acquisition of the binding site of AP-2 transcription factor was essential for tunicate cellulose synthase to gain epidermal-specific expression. Actinobacteria have very GC-rich genomes, regions of which are capable of inducing specific expression in the tunicate epidermis as the AP-2 binds to a GC-rich region. Therefore, the actinobacterial cellulose synthase could have been potentiated to evolve its new function in the ancestor of tunicates with a higher probability than the evolution depending solely on a spontaneous event.

Indexed as

Gene Expression RegulationGene Transfer, HorizontalActinobacteriaAnimalsBinding SitesBiological EvolutionGlucosyltransferasesPhylogenyTranscription Factor AP-2Urochordatacellulose synthaseGlucosyltransferasesTranscription Factor AP-2AP-2celluloseCiona intestinalishorizontal gene transfertunicate

Identifiers

PMID28003446
PMCPMC5204163
OpenAlexW2564746770

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.