Evidence map›Paper›PMID 28003327›Full record

ArticlePlant physiology2017

Identification and Characterization of Arabidopsis Seed Coat Mucilage Proteins.

Allen Yi-Lun Tsai, Tadashi Kunieda, Jason Rogalski, Leonard J Foster, Brian E Ellis, George W Haughn

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
15.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 56 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Allen Yi-Lun TsaiDepartment of Botany (A.Y.-L.T., T.K., G.W.H.), Michael Smith Laboratories (A.Y.-L.T., J.R., L.J.F., B.E.E.), and Department of Biochemistry and Molecular Biology (L.J.F.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
Tadashi KuniedaDepartment of Botany (A.Y.-L.T., T.K., G.W.H.), Michael Smith Laboratories (A.Y.-L.T., J.R., L.J.F., B.E.E.), and Department of Biochemistry and Molecular Biology (L.J.F.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
Jason RogalskiDepartment of Botany (A.Y.-L.T., T.K., G.W.H.), Michael Smith Laboratories (A.Y.-L.T., J.R., L.J.F., B.E.E.), and Department of Biochemistry and Molecular Biology (L.J.F.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
Leonard J FosterDepartment of Botany (A.Y.-L.T., T.K., G.W.H.), Michael Smith Laboratories (A.Y.-L.T., J.R., L.J.F., B.E.E.), and Department of Biochemistry and Molecular Biology (L.J.F.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
Brian E EllisDepartment of Botany (A.Y.-L.T., T.K., G.W.H.), Michael Smith Laboratories (A.Y.-L.T., J.R., L.J.F., B.E.E.), and Department of Biochemistry and Molecular Biology (L.J.F.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
George W HaughnDepartment of Botany (A.Y.-L.T., T.K., G.W.H.), Michael Smith Laboratories (A.Y.-L.T., J.R., L.J.F., B.E.E.), and Department of Biochemistry and Molecular Biology (L.J.F.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4 george.haughn@ubc.ca.ORCID 0000-0001-8164-8826
University of British Columbia · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant cell wall proteins are important regulators of cell wall architecture and function. However, because cell wall proteins are difficult to extract and analyze, they are generally poorly understood. Here, we describe the identification and characterization of proteins integral to the Arabidopsis (Arabidopsis thaliana) seed coat mucilage, a specialized layer of the extracellular matrix composed of plant cell wall carbohydrates that is used as a model for cell wall research. The proteins identified in mucilage include those previously identified by genetic analysis, and several mucilage proteins are reduced in mucilage-deficient mutant seeds, suggesting that these proteins are genuinely associated with the mucilage. Arabidopsis mucilage has both nonadherent and adherent layers. Both layers have similar protein profiles except for proteins involved in lipid metabolism, which are present exclusively in the adherent mucilage. The most abundant mucilage proteins include a family of proteins named TESTA ABUNDANT1 (TBA1) to TBA3; a less abundant fourth homolog was named TBA-LIKE (TBAL). TBA and TBAL transcripts and promoter activities were detected in developing seed coats, and their expression requires seed coat differentiation regulators. TBA proteins are secreted to the mucilage pocket during differentiation. Although reverse genetics failed to identify a function for TBAs/TBAL, the TBA promoters are highly expressed and cell type specific and so should be very useful tools for targeting proteins to the seed coat epidermis. Altogether, these results highlight the mucilage proteome as a model for cell walls in general, as it shares similarities with other cell wall proteomes while also containing mucilage-specific features.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsCell WallDown-RegulationGene Expression Regulation, PlantPlant EpidermisPlant MucilagePromoter Regions, GeneticRNA, MessengerSeedsArabidopsis ProteinsPlant MucilageRNA, Messenger

Identifiers

PMID28003327
PMCPMC5291037
OpenAlexW2565234216

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.