Evidence map›Paper›PMID 28000696›Full record

SynthesisEuropean journal of human genetics : EJHG2017

Meta-analysis of quantitative pleiotropic traits for next-generation sequencing with multivariate functional linear models.

Chi-Yang Chiu, Jeesun Jung, Wei Chen, Daniel E Weeks, Haobo Ren, Michael Boehnke, Christopher I Amos, Aiyi Liu, James L Mills, Mei-Ling Ting Lee and 2 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in European journal of human genetics : EJHG, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Chi-Yang ChiuBiostatistics and Bioinformatics Branch, Division of Intramural Population Health Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD USA.
Jeesun JungLaboratory of Epidemiology and Biometry, National Institute on Alcohol Abuse and Alcoholism, National Institutes of Health, Bethesda, MD, USA.
Wei ChenDivision of Pulmonary Medicine, Allergy and Immunology, The University of Pittsburgh Medical Center, Pittsburgh, PA, USA.
Daniel E WeeksDepartment of Human Genetics and Biostatistics, University of Pittsburgh, Pittsburgh, PA, USA.
Haobo RenData Paradise Inc, Belle Mead, NJ, USA.
Michael BoehnkeDepartment of Biostatistics, The University of Michigan, Ann Arbor, MI, USA.
Christopher I AmosDepartment of Biomedical Data Science, Geisel School of Medicine at Dartmouth, Lebanon, NH, USA.
Aiyi LiuBiostatistics and Bioinformatics Branch, Division of Intramural Population Health Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD USA.
James L MillsEpidemiology Branch, Division of Intramural Population Health Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, USA.
Mei-Ling Ting LeeDepartment of Epidemiology and Biostatistics, University of Maryland College Park, College Park, MD, USA.
Momiao XiongHuman Genetics Center, University of Texas-Houston, Houston, TX, USA.
Ruzong FanBiostatistics and Bioinformatics Branch, Division of Intramural Population Health Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD USA.

Funding

Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Fred W Kolling IV · 1985 to 2026
$91.3M
DESIGN AND ANALYSIS OF HUMAN GENE MAPPING STUDIESR01HG000376 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BOEHNKE, MICHAEL L · 1993 to 2016
$5.5M
NICHD Health Research Board Of Ireland Neural Tube Defects StudyZIAHD002502 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MILLS, JAMES · 2009 to 2022
$2.9M
Statistical methods for population and family-based whole-genome sequence dataR01HG007358 · NHGRI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHEN, WEI · 2014 to 2018
$1.7M
AMD genetics: methods and analysis for progression, prediction, and associationR01EY024226 · NEI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHEN, WEI · 2014 to 2016
$899k
NCI NIH HHS P30 CA023108NEI NIH HHS R01 EY024226NHGRI NIH HHS R01 HG000376NHGRI NIH HHS R01 HG007358
6 · The paper itself

Abstract

To analyze next-generation sequencing data, multivariate functional linear models are developed for a meta-analysis of multiple studies to connect genetic variant data to multiple quantitative traits adjusting for covariates. The goal is to take the advantage of both meta-analysis and pleiotropic analysis in order to improve power and to carry out a unified association analysis of multiple studies and multiple traits of complex disorders. Three types of approximate F -distributions based on Pillai-Bartlett trace, Hotelling-Lawley trace, and Wilks's Lambda are introduced to test for association between multiple quantitative traits and multiple genetic variants. Simulation analysis is performed to evaluate false-positive rates and power of the proposed tests. The proposed methods are applied to analyze lipid traits in eight European cohorts. It is shown that it is more advantageous to perform multivariate analysis than univariate analysis in general, and it is more advantageous to perform meta-analysis of multiple studies instead of analyzing the individual studies separately. The proposed models require individual observations. The value of the current paper can be seen at least for two reasons: (a) the proposed methods can be applied to studies that have individual genotype data; (b) the proposed methods can be used as a criterion for future work that uses summary statistics to build test statistics to meta-analyze the data.

Indexed as

Genetic PleiotropyModels, GeneticFalse Positive ReactionsHigh-Throughput Nucleotide SequencingHumansLinear ModelsMultivariate AnalysisQuantitative Trait, HeritableSequence Analysis, DNA

Identifiers

PMID28000696
PMCPMC5315507

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.