Evidence map›Paper›PMID 27999994›Full record

ArticleHistochemistry and cell biology2017

Functional characterisation of the YIPF protein family in mammalian cells.

Tilen Kranjc, Eugene Dempsey, Gerard Cagney, Nobuhiro Nakamura, Denis C Shields, Jeremy C Simpson

Abstract read
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In one paragraph

Article in Histochemistry and cell biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

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  14. YIPF6 controls sorting of FGF21 into COPII vesicles and promotes obesity.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
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  17. In focus in HCB.Histochemistry and cell biology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 3 countries.

Tilen KranjcSchool of Biology and Environmental Science, University College Dublin, Dublin 4, Ireland.
Eugene DempseySchool of Biology and Environmental Science, University College Dublin, Dublin 4, Ireland.
Gerard CagneyUCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Dublin 4, Ireland.
Nobuhiro NakamuraDepartment of Molecular Biosciences, Faculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita, Kyoto, 603-8555, Japan.
Denis C ShieldsUCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Dublin 4, Ireland.
Jeremy C SimpsonSchool of Biology and Environmental Science, University College Dublin, Dublin 4, Ireland. jeremy.simpson@ucd.ie.ORCID http://orcid.org/0000-0002-7956-7805
University College Dublin · IEKyoto Sangyo University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we carry out a systematic characterisation of the YIPF family of proteins with respect to their subcellular localisation profile, membrane topology and functional effects on the endomembrane system. YIPF proteins primarily localise to the Golgi complex and can be grouped into trans-Golgi-localising YIPFs (YIPF1 and YIPF2) and cis-Golgi-localising YIPFs (YIPF3, YIPF4 and YIPF5), with YIPF6 and YIPF7 showing a broader profile being distributed throughout the Golgi stack. YIPF proteins have a long soluble N-terminal region, which is orientated towards the cytosol, followed by 5 closely stacked transmembrane domains, and a C terminus, orientated towards the lumen of the Golgi. The significance of YIPF proteins for the maintenance of the morphology of the Golgi was tested by RNA interference, revealing a number of specific morphological changes to this organelle on their depletion. We propose a role for this family of proteins in regulating membrane dynamics in the endomembrane system.

Indexed as

Golgi ApparatusHeLa CellsHumansMembrane ProteinsTumor Cells, CulturedMembrane ProteinsYIPF2 protein, humanGolgi apparatusMembrane trafficSubcellular localisationTransmembrane proteinsYIPF

Identifiers

PMID27999994
OpenAlexW2567325735

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.