Evidence map›Paper›PMID 27999990›Full record

ArticlePlanta2017

Carotenoid gene expression explains the difference of carotenoid accumulation in carrot root tissues.

Florent Perrin, Laura Hartmann, Cécile Dubois-Laurent, Ralf Welsch, Sébastien Huet, Latifa Hamama, Mathilde Briard, Didier Peltier, Séverine Gagné, Emmanuel Geoffriau

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Telomere-to-telomere carrot (Horticulture research · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Overexpression of the Golden SNP-CarryingAntioxidants (Basel, Switzerland) · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Florent PerrinIRHS, Agrocampus Ouest, INRA, SFR QuaSaV, Université d'Angers, 49071, Beaucouzé, France.
Laura HartmannIRHS, Agrocampus Ouest, INRA, SFR QuaSaV, Université d'Angers, 49071, Beaucouzé, France.
Cécile Dubois-LaurentIRHS, Agrocampus Ouest, INRA, SFR QuaSaV, Université d'Angers, 49071, Beaucouzé, France.
Ralf WelschFaculty of Biology II, University of Freiburg, Freiburg, Germany.
Sébastien HuetIRHS, Agrocampus Ouest, INRA, SFR QuaSaV, Université d'Angers, 49071, Beaucouzé, France.
Latifa HamamaIRHS, Agrocampus Ouest, INRA, SFR QuaSaV, Université d'Angers, 49071, Beaucouzé, France.
Mathilde BriardIRHS, Agrocampus Ouest, INRA, SFR QuaSaV, Université d'Angers, 49071, Beaucouzé, France.
Didier PeltierIRHS, Agrocampus Ouest, INRA, SFR QuaSaV, Université d'Angers, 49071, Beaucouzé, France.
Séverine GagnéIRHS, Agrocampus Ouest, INRA, SFR QuaSaV, Université d'Angers, 49071, Beaucouzé, France.
Emmanuel GeoffriauIRHS, Agrocampus Ouest, INRA, SFR QuaSaV, Université d'Angers, 49071, Beaucouzé, France. emmanuel.geoffriau@agrocampus-ouest.fr.
Institut Agro Rennes-Angers · FRUniversité d'Angers · FRUniversity of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Main conclusion Variations in gene expression can partially explain the difference of carotenoid accumulation in secondary phloem and xylem of fleshy carrot roots. The carrot root is well divided into two different tissues separated by vascular cambium: the secondary phloem and xylem. The equilibrium between these two tissues represents an important issue for carrot quality, but the knowledge about the respective carotenoid accumulation is sparse. The aim of this work was (i) to investigate if variation in carotenoid biosynthesis gene expression could explain differences in carotenoid content in phloem and xylem tissues and (ii) to investigate if this regulation is differentially modulated in the respective tissues by water-restricted growing conditions. In this work, five carrot genotypes contrasting by their root color were studied in control and water-restricted conditions. Carotenoid content and the relative expression of 13 genes along the carotenoid biosynthesis pathway were measured in the respective tissues. Results showed that in orange genotypes and the purple one, carotenoid content was higher in phloem compared to xylem. For the red one, no differences were observed. Moreover, in control condition, variations in gene expression explained the different carotenoid accumulations in both tissues, while in water-restricted condition, no clear association between gene expression pattern and variations in carotenoid content could be detected except in orange-rooted genotypes. This work shows that the structural aspect of carrot root is more important for carotenoid accumulation in relation with gene expression levels than the consequences of expression changes upon water restriction.

Indexed as

CarotenoidsDaucus carotaGene Expression Regulation, PlantImmunoblottingPhloemPlant RootsXylemCarotenoidsDaucus carota L.PhloemPigmentTranscriptional regulationXylem

Identifiers

PMID27999990
OpenAlexW2562042609

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.