Evidence map›Paper›PMID 27999439›Full record

ArticleThe Journal of antibiotics2017

Angucycline antibiotic waldiomycin recognizes common structural motif conserved in bacterial histidine kinases.

Yoko Eguchi, Toshihide Okajima, Naoya Tochio, Yoichi Inukai, Riko Shimizu, Shuhei Ueda, Shoko Shinya, Takanori Kigawa, Tamo Fukamizo, Masayuki Igarashi and 1 more

Open access · bronzeAbstract read
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In one paragraph

Article in The Journal of antibiotics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Microbial Genomics: Innovative Targets and Mechanisms.Antibiotics (Basel, Switzerland) · 2023
    Review
  6. Review
  7. Review
  8. Review
  9. Review
  10. Potential therapeutic approaches for a sleeping pathogen: tuberculosis a case for bioinorganic chemistry.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2020
    Review
  11. Article
  12. Article
  13. Review
  14. Mzabimycins A and B, novel intracellular angucycline antibiotics produced bySaudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2019
    Article
  15. The Two-Component Signaling System VraSRInfection and immunity · 2018
    Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Yoko EguchiDepartment of Bioscience, Graduate School of Agriculture, Kindai University, Nara, Japan.
Toshihide OkajimaInstitute of Scientific and Industrial Research, Osaka University, Ibaraki, Japan.
Naoya TochioResearch Center for the Mathematics on Chromatin Live Dynamics, Graduate School of Science, Hiroshima University, Higashi-Hiroshima, Japan.
Yoichi InukaiDepartment of Bioscience, Graduate School of Agriculture, Kindai University, Nara, Japan.
Riko ShimizuDepartment of Bioscience, Graduate School of Agriculture, Kindai University, Nara, Japan.
Shuhei UedaDepartment of Bioscience, Graduate School of Agriculture, Kindai University, Nara, Japan.
Shoko ShinyaDepartment of Bioscience, Graduate School of Agriculture, Kindai University, Nara, Japan.
Takanori KigawaRIKEN Systems and Structural Biology Center, Yokohama, Japan.
Tamo FukamizoDepartment of Bioscience, Graduate School of Agriculture, Kindai University, Nara, Japan.
Masayuki IgarashiInstitute of Microbial Chemistry (BIKAKEN), Tokyo, Japan.
Ryutaro UtsumiDepartment of Bioscience, Graduate School of Agriculture, Kindai University, Nara, Japan.
Kindai University · JPSystems Biology Institute · JPMicrobial Chemistry Research Foundation · JPOsaka Research Institute of Industrial Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two-component signal transduction systems (TCSs), composed of a histidine kinase sensor (HK) and its cognate response regulator, sense and respond to environmental changes and are related to the virulence of pathogens. TCSs are potential targets for alternative antibiotics and anti-virulence agents. Here we found that waldiomycin, an angucycline antibiotic that inhibits a growth essential HK, WalK, in Gram-positive bacteria, also inhibits several class I HKs from the Gram-negative Escherichia coli. NMR analyses and site-directed mutagenesis studies using the osmo-sensing EnvZ, a prototypical HK of E. coli, showed that waldiomycin directly binds to both H-box and X-region, which are the two conserved regions in the dimerization-inducing and histidine-containing phosphotransfer (DHp) domain of HKs. Waldiomycin inhibits phosphorylation of the conserved histidine in the H-box. Analysis of waldiomycin derivatives suggests that the angucyclic ring, situated near the H-box in the waldiomycin-EnvZ DHp domain complex model, is responsible for the inhibitory activity. We demonstrate that waldiomycin is an HK inhibitor binding to the H-box region and has the potential of inhibiting a broad spectrum of HKs.

Indexed as

Amino Acid SequenceAnti-Bacterial AgentsBacterial Outer Membrane ProteinsConserved SequenceEscherichia coliEscherichia coli ProteinsHistidine KinaseModels, StructuralMultienzyme ComplexesMutagenesis, Site-DirectedPhosphorylationQuinonesAnti-Bacterial AgentsBacterial Outer Membrane ProteinsenvZ protein, E coliEscherichia coli ProteinsHistidine KinaseMultienzyme ComplexesQuinoneswaldiomycin

Identifiers

PMID27999439
OpenAlexW2561698087

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.