Evidence map›Paper›PMID 27999174›Full record

ArticleScience signaling2016

The histone deubiquitinase OTLD1 targets euchromatin to regulate plant growth.

Ido Keren, Vitaly Citovsky

Open access · greenAbstract read
In one paragraph

Article in Science signaling, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Ido KerenDepartment of Biochemistry and Cell Biology, State University of New York, Stony Brook, NY 11794-5215, USA. ido.keren@stonybrook.edu.
Vitaly CitovskyDepartment of Biochemistry and Cell Biology, State University of New York, Stony Brook, NY 11794-5215, USA.
State University of New York · USStony Brook University · US

Funding

TRANSPORT THROUGH PLASMODESMATAR01GM050224 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI CITOVSKY, VITALY H · 1994 to 2020
$5.7M
NIGMS NIH HHS R01 GM050224
6 · The paper itself

Abstract

Histone monoubiquitination is associated with active chromatin and plays an important role in epigenetic regulation of gene expression in plants. Deubiquitinating enzymes remove the ubiquitin group from histones and thereby contribute to gene repression. The Arabidopsis thaliana genome encodes 50 deubiquitinases, yet only 2 of them-UBP26 and OTLD1, members of the USP/UBP (ubiquitin-specific protease and ubiquitin-binding protein) and OTU (ovarian tumor protease) deubiquitinase families-are known to target histones. Furthermore, UBP26 is the only plant histone deubiquitinase for which the functional role has been characterized in detail. We used gain- and loss-of-function alleles of OTLD1 to examine its role in the plant life cycle and showed that OTLD1 stimulates plant growth, increases cell size, and induces transcriptional repression of five major regulators of plant organ growth and development: GA20OX, WUS, OSR2, ARL, and ABI5 OTLD1 associated with chromatin at each of these target genes and promoted the removal of euchromatic histone acetylation, ubiquitination, and methylation marks. Thus, these data indicate that OTLD1 promotes the concerted epigenetic regulation of a set of genes that collectively limit plant growth.

Indexed as

ArabidopsisArabidopsis ProteinsCysteine ProteasesEpigenesis, GeneticEuchromatinGene Expression Regulation, PlantUbiquitin-Specific ProteasesArabidopsis ProteinsCysteine ProteasesEuchromatinOTLD1 protein, ArabidopsisUbiquitin-Specific ProteasesUBP26 protein, Arabidopsis

Identifiers

PMID27999174
PMCPMC9470540
OpenAlexW2564075098

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.