Evidence map›Paper›PMID 27998928›Full record

ArticleThe Journal of experimental medicine2017

The cell cycle restricts activation-induced cytidine deaminase activity to early G1.

Qiao Wang, Kyong-Rim Kieffer-Kwon, Thiago Y Oliveira, Christian T Mayer, Kaihui Yao, Joy Pai, Zhen Cao, Marei Dose, Rafael Casellas, Mila Jankovic and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 76 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Qiao WangLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065 qiaoqiaolang@gmail.com nussen@rockefeller.edu drobbiani@rockefeller.edu.ORCID 0000-0001-6416-1733
Kyong-Rim Kieffer-KwonGenomics and Immunity, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD 20892.
Thiago Y OliveiraLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065.ORCID 0000-0002-2654-0879
Christian T MayerLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065.
Kaihui YaoLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065.
Joy PaiLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065.
Zhen CaoWeill Cornell Medical College and Memorial Sloan-Kettering Cancer Center, New York, NY 10065.
Marei DoseGenomics and Immunity, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD 20892.
Rafael CasellasGenomics and Immunity, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD 20892.
Mila JankovicLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065.
Michel C NussenzweigLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065 qiaoqiaolang@gmail.com nussen@rockefeller.edu drobbiani@rockefeller.edu.ORCID 0000-0003-0592-8564
Davide F RobbianiLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065 qiaoqiaolang@gmail.com nussen@rockefeller.edu drobbiani@rockefeller.edu.ORCID 0000-0001-7379-3484
Rockefeller University · USNational Institutes of Health · USHoward Hughes Medical Institute · USMemorial Sloan Kettering Cancer Center · US

Funding

RAG and AID biologyZIAAR041148 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI O'SHEA, JOHN · 2009 to 2025
$44.8M
Class Switch Recombination in B LymphocytesR37AI037526 · NIAID · ROCKEFELLER UNIVERSITY · PI NUSSENZWEIG, MICHEL C · 2014 to 2023
$5.4M
SIGNALLING PATHWAYS IN AUTOIMMUNITYR01AI037526 · NIAID · ROCKEFELLER UNIVERSITY · PI NUSSENZWEIG, MICHEL C · 1994 to 2012
$5.0M
Cellular dynamics in germinal centers during vaccinationR01AI072529 · NIAID · ROCKEFELLER UNIVERSITY · PI NUSSENZWEIG, MICHEL C · 2007 to 2016
$4.3M
Chromosome fragility and translocations in lymphocytesR21AI112602 · NIAID · ROCKEFELLER UNIVERSITY · PI ROBBIANI, DAVIDE FILIPPO · 2015 to 2016
$466k
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI037526NIAID NIH HHS R01 AI072529NIAID NIH HHS R21 AI112602NIAID NIH HHS R37 AI037526
6 · The paper itself

Abstract

Activation-induced cytidine deaminase (AID) converts cytosine into uracil to initiate somatic hypermutation (SHM) and class switch recombination (CSR) of antibody genes. In addition, this enzyme produces DNA lesions at off-target sites that lead to mutations and chromosome translocations. However, AID is mostly cytoplasmic, and how and exactly when it accesses nuclear DNA remains enigmatic. Here, we show that AID is transiently in spatial contact with genomic DNA from the time the nuclear membrane breaks down in prometaphase until early G1, when it is actively exported into the cytoplasm. Consistent with this observation, the immunoglobulin (Igh) gene deamination as measured by uracil accumulation occurs primarily in early G1 after chromosomes decondense. Altering the timing of cell cycle-regulated AID nuclear residence increases DNA damage at off-target sites. Thus, the cell cycle-controlled breakdown and reassembly of the nuclear membrane and the restoration of transcription after mitosis constitute an essential time window for AID-induced deamination, and provide a novel DNA damage mechanism restricted to early G1.

Indexed as

G1 PhaseAICDA (Activation-Induced Cytidine Deaminase)AnimalsCell CycleCell NucleusCells, CulturedCytidine DeaminaseDeaminationDNA DamageGenes, ImmunoglobulinMiceMice, Inbred C57BLTranscription, GeneticAICDA (Activation-Induced Cytidine Deaminase)Cytidine Deaminase

Identifiers

PMID27998928
PMCPMC5206505
OpenAlexW2566005200

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.