ArticleScientific data2016
Transcriptome characterisation and simple sequence repeat marker discovery in the seagrass Posidonia oceanica.
Article in Scientific data, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.
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Who cites it
9 citing papers in PubMed.
- Elucidation of Spartina dimethylsulfoniopropionate synthesis genes enables engineering of stress tolerant plants.Nature communications · 2024Article
- An efficient protocol for extracting thylakoid membranes and total leaf proteins from Posidonia oceanica and other polyphenol-rich plants.Plant methods · 2024Article
- EST-SSR Markers' Development Based on RNA-Sequencing and Their Application in Population Genetic Structure and Diversity Analysis ofCurrent issues in molecular biology · 2022Article
- Low Long Terminal Repeat (LTR)-Retrotransposon Expression in Leaves of the Marine PhanerogamLife (Basel, Switzerland) · 2020Article
- Transcriptome sequencing, molecular markers, and transcription factor discovery of Platanus acerifolia in the presence of Corythucha ciliata.Scientific data · 2019Article
- De novo assembly of transcriptomes, mining, and development of novel EST-SSR markers in Curcuma alismatifolia (Zingiberaceae family) through Illumina sequencing.Scientific reports · 2019Article
- Adaptive responses along a depth and a latitudinal gradient in the endemic seagrass Posidonia oceanica.Heredity · 2019Article
- Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages.Scientific data · 2018Article
- SeagrassDB: An open-source transcriptomics landscape for phylogenetically profiled seagrasses and aquatic plants.Scientific reports · 2018Article
Corrections and comments
- Erratum issuedCorrigendum: Transcriptome characterisation and simple sequence repeat marker discovery in the seagrass Posidonia oceanica.2017 · Lamontara, A [corrected to Lamontanara, A]
Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Posidonia oceanica is an endemic seagrass in the Mediterranean Sea, where it provides important ecosystem services and sustains a rich and diverse ecosystem. P. oceanica meadows extend from the surface to 40 meters depth. With the aim of boosting research in this iconic species, we generated a comprehensive RNA-Seq data set for P. oceanica by sequencing specimens collected at two depths and two times during the day. With this approach we attempted to capture the transcriptional diversity associated with change in light and other depth-related environmental factors. Using this extensive data set we generated gene predictions and identified an extensive catalogue of potential Simple Sequence Repeats (SSR) markers. The data generated here will open new avenues for the analysis of population genetic features and functional variation in P. oceanica. In total, 79,235 contigs were obtained by the assembly of 70,453,120 paired end reads. 43,711 contigs were successfully annotated. A total of 17,436 SSR were identified within 13,912 contigs.
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