ArticleScientific reports2016
De novo transcriptome assembly, development of EST-SSR markers and population genetic analyses for the desert biomass willow, Salix psammophila.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed.
- Genetic Structure and Conservation Management of EndemicPlants (Basel, Switzerland) · 2025Article
- The development of SSR markers based on RNA-sequencing and its validation between and within Carex L. species.BMC plant biology · 2021Article
- Development and Application of EST-SSR Markers inFrontiers in genetics · 2021Article
- Comprehensive identification and characterization of simple sequence repeats based on the whole-genome sequences of 14 forest and fruit trees.Forestry research · 2021Article
- Characterization, validation, and cross-species transferability of EST-SSR markers developed from Lycoris aurea and their application in genetic evaluation of Lycoris species.BMC plant biology · 2020Article
- Development and characterization of 16 novel microsatellite markers by Transcriptome sequencing for Angelica dahurica and test for cross-species amplification.BMC plant biology · 2020Article
- Transcriptome analysis of terpenoid biosynthetic genes and simple sequence repeat marker screening in Eucommia ulmoides.Molecular biology reports · 2020Article
- Genetic Divergence and Relationship AmongFrontiers in genetics · 2020Article
- Article
- Assessment of morphological and genetic variability through genic microsatellite markers for essential oil in Sandalwood (3 Biotech · 2019Article
- Comparative genomics and transcriptomics analysis reveals evolution patterns of selection in the Salix phylogeny.BMC genomics · 2019Article
- Development and application of EST-SSRs markers for analysis of genetic diversity in erect milkvetch (Astragalus adsurgens Pall.).Molecular biology reports · 2019Article
- Transcriptome-wide mining, characterization, and development of microsatellite markers in Lychnis kiusiana (Caryophyllaceae).BMC plant biology · 2019Article
- Article
- De Novo Transcriptome Assembly and Population Genetic Analyses for an Endangered Chinese EndemicGenes · 2018Article
- Article
- Mining and Development of Novel SSR Markers Using Next Generation Sequencing (NGS) Data in Plants.Molecules (Basel, Switzerland) · 2018Review
- From population connectivity to the art of striping Russian dolls: the lessons fromEcology and evolution · 2018Article
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Authors and funding
10 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Salix psammophila, a sandy shrub known as desert willow, is regarded as a potential biomass feedstock and plays an important role in maintaining local ecosystems. However, a lack of genomic data and efficient molecular markers limit the study of its population evolution and genetic breeding. In this study, chromosome counts, flow cytometry and SSR analyses indicated that S. psammophila is tetraploid. A total of 6,346 EST-SSRs were detected based on 71,458 de novo assembled unigenes from transcriptome data. Twenty-seven EST-SSR markers were developed to evaluate the genetic diversity and population structure of S. psammophila from eight natural populations in Northern China. High levels of genetic diversity (mean 10.63 alleles per locus; mean H
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