Evidence map›Paper›PMID 27995349›Full record

ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2017

The essential Drosophila CLAMP protein differentially regulates non-coding roX RNAs in male and females.

Jennifer A Urban, Caroline A Doherty, William T Jordan, Jacob E Bliss, Jessica Feng, Marcela M Soruco, Leila E Rieder, Maria A Tsiarli, Erica N Larschan

Abstract read
In one paragraph

Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 42 citations in OpenAlex.

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  10. Molecular biology of the cell · 2020
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  11. Complete reconstitution of bypass and blocking functions in a minimal artificialProceedings of the National Academy of Sciences of the United States of America · 2019
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  12. The zinc-finger protein CLAMP promotesJournal of cell science · 2019
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  15. Review
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  18. Histone locus regulation by theGenes & development · 2017
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jennifer A UrbanDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA.
Caroline A DohertyDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA.
William T JordanDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA.
Jacob E BlissDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA.
Jessica FengDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA.
Marcela M SorucoDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA.
Leila E RiederDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA.
Maria A TsiarliDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA.
Erica N LarschanDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA. Erica_Larschan@Brown.edu.
Brown University · US

Funding

Establishing coordinate gene regulation during Drosophila dosage compensationR01GM098461 · NIGMS · BROWN UNIVERSITY · PI LARSCHAN, ERICA NICOLE · 2011 to 2016
$2.1M
Defining a mechanism for targeting the X-chromosome during dosage compensationF31GM108423 · NIGMS · BROWN UNIVERSITY · PI URBAN, JENNIFER ANNE · 2013 to 2015
$85k
NIGMS NIH HHS F31 GM108423NIGMS NIH HHS R01 GM098461
6 · The paper itself

Abstract

Heterogametic species require chromosome-wide gene regulation to compensate for differences in sex chromosome gene dosage. In Drosophila melanogaster, transcriptional output from the single male X-chromosome is equalized to that of XX females by recruitment of the male-specific lethal (MSL) complex, which increases transcript levels of active genes 2-fold. The MSL complex contains several protein components and two non-coding RNA on the X ( roX) RNAs that are transcriptionally activated by the MSL complex. We previously discovered that targeting of the MSL complex to the X-chromosome is dependent on the chromatin-linked adapter for MSL proteins (CLAMP) zinc finger protein. To better understand CLAMP function, we used the CRISPR/Cas9 genome editing system to generate a frameshift mutation in the clamp gene that eliminates expression of the CLAMP protein. We found that clamp null females die at the third instar larval stage, while almost all clamp null males die at earlier developmental stages. Moreover, we found that in clamp null females roX gene expression is activated, whereas in clamp null males roX gene expression is reduced. Therefore, CLAMP regulates roX abundance in a sex-specific manner. Our results provide new insights into sex-specific gene regulation by an essential transcription factor.

Indexed as

Dosage Compensation, GeneticGene Expression RegulationAnimalsDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsFemaleMaleNuclear ProteinsRNA, UntranslatedTranscription FactorsX ChromosomeCLAMP protein, DrosophilaDNA-Binding ProteinsDrosophila Proteinsmsl-1 protein, DrosophilaNuclear ProteinsRNA, UntranslatedroX1 protein, DrosophilaTranscription Factorsdosage compensationDrosophilagene regulationtranscription factor

Identifiers

PMID27995349
PMCPMC5441936
OpenAlexW2562767731

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.