Evidence map›Paper›PMID 27995154›Full record

ArticleData in brief2017

Difference distance map data of alternative crystal forms of UlaA.

Ake Vastermark, Adelle Driker, Jingwei Weng, Xiaochun Li, Jiawei Wang, Milton H Saier

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Data in brief, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ake VastermarkDepartment of Molecular Biology, University of California at San Diego, La Jolla, CA 92093-0116, USA.
Adelle DrikerDepartment of Molecular Biology, University of California at San Diego, La Jolla, CA 92093-0116, USA.
Jingwei WengShanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry and Institute of Biomedical Sciences, Fudan University, Shanghai, People's Republic of China.
Xiaochun LiLaboratory of Cell Biology, Howard Hughes Medical Institute, The Rockefeller University, New York, New York 10065, USA.
Jiawei WangState Key Laboratory of Biomembrane and Membrane Biotechnology, School of Life Sciences, Tsinghua University, Beijing, People's Republic of China.
Milton H SaierDepartment of Molecular Biology, University of California at San Diego, La Jolla, CA 92093-0116, USA.

Funding

TransportPDB: Center for the X-ray Structure Determination of Human TransportersU54GM094610 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI SAIER, MILTON H. · 2010 to 2014
$12.2M
The Transporter Classification Database (TCDB)R01GM077402 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SAIER, MILTON H. · 2006 to 2021
$4.7M
NIGMS NIH HHS R01 GM077402NIGMS NIH HHS U54 GM094610
6 · The paper itself

Abstract

We introduce the value of information obtained by comparing alternative crystal forms of the same sub-state (of outward open UlaA, our example protein), which is found in the same lattice configuration but different space groups. We compare instability estimates obtained using this new method (alternative crystal forms) with temperature factors. Using a transport assay result, we correlate observations for two homologous secondary structure elements, and show that the alternative states method for obtaining instability estimates provide differentiating information about an important and immobilized mid-TMS region. The data presented in this article are related to the article entitled "The V-motifs facilitate the substrate capturing step of the PTS elevator mechanism" (A. Vastermark, A. Driker, J. Weng, X. Li, J. Wang, M.H. Saier Jr., 2016).

Indexed as

APC, Amino acid-Polyamine organoCation superfamily of secondary carriersC2A, P21A, Space group namesNMA, Normal Mode AnalysisPTS, Bacterial Phospho-Transferase System

Identifiers

PMID27995154
PMCPMC5154960

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.