Evidence map›Paper›PMID 27994184›Full record

ArticleJournal of genetics2016

Complete mitochondrial genome of threatened mahseer Tor tor (Hamilton 1822) and its phylogenetic relationship within Cyprinidae family.

A Pavan-Kumar, Sudhanshu Raman, Prakash G Koringa, Namrata Patel, Tejas Shah, Rajeev K Singh, Gopal Krishna, C G Joshi, P Gireesh-Babu, Aparna Chaudhari

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Article in Journal of genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  5. The firstComputational and structural biotechnology journal · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

A Pavan-KumarFish Genetics and Biotechnology Division, ICAR-Central Institute of Fisheries Education (Deemed University) ICAR, Mumbai 400 061, India. pavankumar@cife.edu.in.
Sudhanshu Raman
Prakash G Koringa
Namrata Patel
Tejas Shah
Rajeev K Singh
Gopal Krishna
C G Joshi
P Gireesh-Babu
Aparna Chaudhari

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mahseers (Tor, Neolissochilus and Naziritor) are an important group of fishes endemic to Asia with the conservation status of most species evaluated as threatened. Conservation plans to revive these declining wild populations are hindered by unstable taxonomy. Molecular phylogeny studies with mitochondrial genome have been successfully used to reconstruct the phylogenetic tree and to resolve taxonomic ambiguity. In the present study, complete mitochondrial genome of Tor tor has been sequenced using ion torrent next-generation sequencing platform with coverage of more than 1000 x. Comparative mitogenome analysis shows higher divergence value at ND1 gene than COI gene. Further, occurrence of a distinct genetic lineage of T. tor is revealed. The phylogenetic relationship among mahseer group has been defined as Neolissochilus hexagonolepis ((T. sinensis (T. putitora, T. tor), (T. khudree, T. tambroides)).

Indexed as

Endangered SpeciesGenome, MitochondrialPhylogenyAnimalsCluster AnalysisCyprinidaeGenes, MitochondrialGenes, rRNAOpen Reading FramesRNA, TransferUntranslated RegionsRNA, TransferUntranslated Regions

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.