Evidence map›Paper›PMID 27993162›Full record

ArticleGenome biology2016

TET enzymes: double agents in the transposable element-host genome conflict.

Patricia Gerdes, Sandra R Richardson, Geoffrey J Faulkner

Open access · goldAbstract readComment
In one paragraph

Article in Genome biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Transposons disrupt genomic stability and trigger cancers.Frontiers in cellular and infection microbiology · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Patricia GerdesMater Research Institute, University of Queensland, TRI Building, Woolloongabba, QLD 4102, Australia.
Sandra R RichardsonMater Research Institute, University of Queensland, TRI Building, Woolloongabba, QLD 4102, Australia.
Geoffrey J FaulknerMater Research Institute, University of Queensland, TRI Building, Woolloongabba, QLD 4102, Australia. faulknergj@gmail.com.
Mater Research · AUUniversity of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mouse genome is replete with retrotransposon sequences, from evolutionarily young elements with mutagenic potential that must be controlled, to inactive molecular fossils whose sequences can be domesticated over evolutionary time to benefit the host genome. In an exciting new study, de la Rica and colleagues have uncovered a complex relationship between ten-eleven translocation (TET) proteins and retrotransposons in mouse embryonic stem cells (ESCs), implicating TETs as enhancers in the exaptation and function of retroelement sequences. Furthermore, they have demonstrated that active demethylation of retrotransposons does not correlate with their increased expression in ESCs, calling into question long-held assumptions regarding the importance of DNA demethylation for retrotransposon expression, and revealing novel epigenetic players in retrotransposon control.Please see related Research article: http://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1096-8.

Indexed as

Evolution, MolecularAnimalsDNA-Binding ProteinsDNA MethylationEpigenomicsGene Expression RegulationGenomeLong Interspersed Nucleotide ElementsMiceMouse Embryonic Stem CellsProto-Oncogene ProteinsRegulatory Sequences, Nucleic AcidRetroelementsDNA-Binding ProteinsProto-Oncogene ProteinsRetroelementsTET1 protein, mouse

Identifiers

PMID27993162
PMCPMC5170891
OpenAlexW2565890837

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.