Evidence map›Paper›PMID 27993132›Full record

ArticleBMC infectious diseases2016

Performance of the G4 Xpert

Nila J Dharan, Robert Blakemore, Alex Sloutsky, Devinder Kaur, Richard C Alexander, Minoo Ghajar, Kimberlee A Musser, Vincent E Escuyer, Marie-Claire Rowlinson, Susanne Crowe and 5 more

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 3 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 3 syntheses or guidelines pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. XpertThe Cochrane database of systematic reviews · 2018
    Pooled it
  4. Article
  5. Performances and usefulness of Xpert MTB/RIF assay in low-incidence settings: not that bad?European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 3 countries.

Nila J DharanDepartment of Medicine, New Jersey Medical School, Rutgers, The State University of New Jersey, 185 South Orange Avenue, MSB I-689, Newark, NJ, 07103, USA. Dharannj@njms.rutgers.edu.
Robert BlakemoreDepartment of Medicine, New Jersey Medical School, Rutgers, The State University of New Jersey, 185 South Orange Avenue, MSB I-689, Newark, NJ, 07103, USA.
Alex SloutskyUniversity of Massachusetts Medical School, Worcester, MA, USA.
Devinder KaurUniversity of Massachusetts Medical School, Worcester, MA, USA.
Richard C AlexanderOrange County Health Care Agency, Santa Ana, CA, USA.
Minoo GhajarOrange County Health Care Agency, Santa Ana, CA, USA.
Kimberlee A MusserWadsworth Center, New York State Department of Health, Albany, NY, USA.
Vincent E EscuyerWadsworth Center, New York State Department of Health, Albany, NY, USA.
Marie-Claire RowlinsonFlorida Department of Health, Jacksonville, FL, USA.
Susanne CroweFlorida Department of Health, Jacksonville, FL, USA.
Rafael Laniado-LaborinClínica y Laboratorio de Tuberculosis, Hospital General Tijuana, Tijuana, Mexico.
Eloise ValliFoundation for Innovative New Diagnostics, Geneva, Switzerland.
Pamela NabetaFoundation for Innovative New Diagnostics, Geneva, Switzerland.
Pamela JohnsonCepheid, Sunnyvale, CA, USA.
David AllandDepartment of Medicine, New Jersey Medical School, Rutgers, The State University of New Jersey, 185 South Orange Avenue, MSB I-689, Newark, NJ, 07103, USA. Allandda@njms.rutgers.edu.
Rutgers, The State University of New Jersey · USFlorida Department of Health · USFoundation for Innovative New Diagnostics · CHOrange County Healthcare Agency · USUniversity of Massachusetts Chan Medical School · USNew York State Department of Health · USUniversidad de Tijuana · MXWadsworth Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Xpert

methodsAn analytical study was performed to assess Xpert detection of mutations associated with rifampin resistance in rifampin-susceptible and -resistant isolates. A clinical study was performed in which specimens from US and non-US persons suspected of tuberculosis (TB) were tested to determine Xpert performance characteristics. All specimens underwent smear microscopy, mycobacterial culture, conventional drug-susceptibility testing and Xpert testing; DNA from isolates with discordant rifampin resistance results was sequenced.

resultsAmong 191 laboratory-prepared isolates in the analytical study, Xpert sensitivity for detection of rifampin resistance associated mutations was 97.7% and specificity was 90.8%, which increased to 99.0% after DNA sequencing analysis of the discordant samples. Of the 1,096 subjects in the four clinical studies, 49% were from the US. Overall, Xpert detected MTBc in 439 of 468 culture-positive specimens for a sensitivity of 93.8% (95% confidence interval [CI]: 91.2%-95.7%) and did not detect MTBc in 620 of 628 culture-negative specimens for a specificity of 98.7% (95% CI: 97.5%-99.4%). Sensitivity was 99.7% among smear-positive cases, and 76.1% among smear-negative cases. Non-determinate MTBc detection and false-positive RIF resistance results were low (1.2 and 0.9%, respectively).

conclusionsThe updated Xpert assay retained the high sensitivity and specificity of the previous assay versions and demonstrated low rates of non-determinate and RIF resistance false positive results.

Indexed as

Antibiotics, AntitubercularRifampinAdolescentAdultAgedAged, 80 and overBiological AssayCase-Control StudiesDeveloping CountriesDNA, BacterialDrug Resistance, BacterialFalse Positive ReactionsFemaleHumansMaleMicrobial Sensitivity TestsAntibiotics, AntitubercularDNA, BacterialRifampinDiagnosticsG4GeneXpertTuberculosisXpert

Identifiers

PMID27993132
PMCPMC5168809
OpenAlexW2564080015

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.