Evidence map›Paper›PMID 27992593›Full record

ArticlePloS one2016

Selection and Validation of Reference Genes for Gene Expression Analysis in Vigna angularis Using Quantitative Real-Time RT-PCR.

Chao Chi, Yongqiang Shen, Lihua Yin, Xiwang Ke, Dong Han, Yuhu Zuo

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
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  6. Cloning and functional study ofBreeding science · 2023
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  8. Review
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  11. Breeding science · 2022
    Article
  12. Article
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  14. Review
  15. Article
  16. Review
  17. Article
  18. Validation of reference genes for qRT-PCR data normalisation in lentil (Physiology and molecular biology of plants : an international journal of functional plant biology · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Chao ChiHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, People's Republic of China.
Yongqiang ShenHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, People's Republic of China.
Lihua YinHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, People's Republic of China.
Xiwang KeHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, People's Republic of China.
Dong HanHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, People's Republic of China.
Yuhu ZuoHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, People's Republic of China.ORCID http://orcid.org/0000-0001-5718-9738

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adzuki bean (Vigna angularis) is one of the most important legume crops in Asian countries like China, Japan and Korea due to its nutritious protein and starch contents. In spite of its economic importance, gene expression analysis system for gene function verification of adzuki bean is still absent. Therefore, reference genes for gene expression analysis based on the quantitative real time PCR (qRT-PCR) were screened in current study. A total of nine general housekeeping genes, including ACT, Fbox, ZMPP, GAPDH, EF, PP2A, UBC, UBN and PTB were evaluated for their expression stability by qRT-PCR in four adzuki bean cultivars, three different tissues, four abiotic stress and one biotic stress. The best group of candidates as reference genes were as follows: PTB and ACT for different cultivars; EF and UBN for different tissues; ACT and ZMPP for biotic stress and waterlogging stress; Fbox and UBC for salinity-alkalinity stress; Fbox and PTB for drought stress. Our results will provide a more accurate and reliable normalization of qRT-PCR data in adzuki bean.

Indexed as

Genes, EssentialCrops, AgriculturalDroughtsGene Expression ProfilingGene Expression Regulation, PlantPlant ProteinsReal-Time Polymerase Chain ReactionReference StandardsReverse Transcriptase Polymerase Chain ReactionSalinityStress, PhysiologicalVignaPlant Proteins

Identifiers

PMID27992593
PMCPMC5161372

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.