Evidence map›Paper›PMID 27992411›Full record

ArticleNature nanotechnology2017

Real-time shape approximation and fingerprinting of single proteins using a nanopore.

Erik C Yusko, Brandon R Bruhn, Olivia M Eggenberger, Jared Houghtaling, Ryan C Rollings, Nathan C Walsh, Santoshi Nandivada, Mariya Pindrus, Adam R Hall, David Sept and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature nanotechnology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 173 papers.

0numbers the graph read from it
0cells of the map it votes in
173citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

173 citing papers in PubMed.

  1. Review
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  11. Review
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  14. Article
  15. Threading of Single Protein Molecules Through a Solid-State Nanopore.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  16. Metrology of Nanoscale Objects Using Nanopores.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  17. Article
  18. Article
  19. Article
  20. Review

113 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Erik C YuskoDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA.ORCID 0000-0003-3559-8375
Brandon R BruhnDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA.
Olivia M EggenbergerDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA.
Jared HoughtalingDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA.
Ryan C RollingsDepartment of Physics, University of Arkansas, Fayetteville, Arkansas 72701, USA.
Nathan C WalshDepartment of Physics, University of Arkansas, Fayetteville, Arkansas 72701, USA.
Santoshi NandivadaDepartment of Physics, University of Arkansas, Fayetteville, Arkansas 72701, USA.
Mariya PindrusDepartment of Pharmaceutical Sciences, University of Connecticut, Storrs, Connecticut 06269, USA.
Adam R HallDepartment of Biomedical Engineering and Comprehensive Cancer Center, Wake Forest University School of Medicine, Winston Salem, North Carolina 27157, USA.
David SeptDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA.
Jiali LiDepartment of Physics, University of Arkansas, Fayetteville, Arkansas 72701, USA.
Devendra S KaloniaDepartment of Pharmaceutical Sciences, University of Connecticut, Storrs, Connecticut 06269, USA.
Michael MayerDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA.

Funding

Chip-Based and Single Protein Transport Assays of Multidrug Resistance TransporteR01GM081705 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MAYER, MICHAEL · 2007 to 2011
$1.4M
Exploration of Solid-state Nanopore Reading Labeled Linear DNA SequenceR21HG004776 · NHGRI · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI LI, JIALI · 2008 to 2012
$1.0M
Solid-state Nanopore Identification for ProteinsR21HG003290 · NHGRI · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI LI, JIALI · 2004 to 2009
$680k
NHGRI NIH HHS R21 HG003290NHGRI NIH HHS R21 HG004776NIGMS NIH HHS R01 GM081705
6 · The paper itself

Abstract

Established methods for characterizing proteins typically require physical or chemical modification steps or cannot be used to examine individual molecules in solution. Ionic current measurements through electrolyte-filled nanopores can characterize single native proteins in an aqueous environment, but currently offer only limited capabilities. Here we show that the zeptolitre sensing volume of bilayer-coated solid-state nanopores can be used to determine the approximate shape, volume, charge, rotational diffusion coefficient and dipole moment of individual proteins. To do this, we developed a theory for the quantitative understanding of modulations in ionic current that arise from the rotational dynamics of single proteins as they move through the electric field inside the nanopore. The approach allows us to measure the five parameters simultaneously, and we show that they can be used to identify, characterize and quantify proteins and protein complexes with potential implications for structural biology, proteomics, biomarker detection and routine protein analysis.

Indexed as

Models, ChemicalNanoporesLipid BilayersMultiprotein ComplexesLipid BilayersMultiprotein Complexes

Identifiers

PMID27992411

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.