Evidence map›Paper›PMID 27991712›Full record

ArticleTraffic (Copenhagen, Denmark)2017

Targeting of tail-anchored membrane proteins to subcellular organelles in Toxoplasma gondii.

Leah R Padgett, Gustavo Arrizabalaga, William J Sullivan

Open access · greenAbstract read
In one paragraph

Article in Traffic (Copenhagen, Denmark), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Leah R PadgettDepartment of Pharmacology and Toxicology, Indiana University School of Medicine, Indianapolis, Indiana.
Gustavo ArrizabalagaDepartment of Pharmacology and Toxicology, Indiana University School of Medicine, Indianapolis, Indiana.
William J SullivanDepartment of Pharmacology and Toxicology, Indiana University School of Medicine, Indianapolis, Indiana.
Indiana University School of MedicineIndiana University – Purdue University Indianapolis · US

Funding

The GCN5b acetylation complex in the AIDS pathogen ToxoplasmaR01AI116496 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI SULLIVAN, WILLIAM J · 2015 to 2019
$1.9M
Dissecting a novel mechanism of drug-induced death in Toxoplasma gondiiR01AI089808 · NIAID · UNIVERSITY OF IDAHO · PI ARRIZABALAGA, GUSTAVO A · 2010 to 2013
$882k
Calcium signaling in the parasitophorous vacuole of Toxoplasma gondiiR21AI119516 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI ARRIZABALAGA, GUSTAVO A · 2015 to 2016
$460k
NIAID NIH HHS R01 AI089808NIAID NIH HHS R01 AI116496NIAID NIH HHS R21 AI119516
6 · The paper itself

Abstract

Proper protein localization is essential for critical cellular processes, including vesicle-mediated transport and protein translocation. Tail-anchored (TA) proteins are integrated into organellar membranes via the C-terminus, orienting the N-terminus towards the cytosol. Localization of TA proteins occurs posttranslationally and is governed by the C-terminus, which contains the integral transmembrane domain (TMD) and targeting sequence. Targeting of TA proteins is dependent on the hydrophobicity of the TMD as well as the length and composition of flanking amino acid sequences. We previously identified an unusual homologue of elongator protein, Elp3, in the apicomplexan parasite Toxoplasma gondii as a TA protein targeting the outer mitochondrial membrane. We sought to gain further insight into TA proteins and their targeting mechanisms using this early-branching eukaryote as a model. Our bioinformatics analysis uncovered 59 predicted TA proteins in Toxoplasma, 9 of which were selected for follow-up analyses based on representative features. We identified novel TA proteins that traffic to specific organelles in Toxoplasma, including the parasite endoplasmic reticulum, mitochondrion, and Golgi apparatus. Domain swap experiments elucidated that targeting of TA proteins to these specific organelles was strongly influenced by the TMD sequence, including charge of the flanking C-terminal sequence.

Indexed as

Amino Acid SequenceBiological TransportEndoplasmic ReticulumGolgi ApparatusMembrane ProteinsMitochondriaProtein BindingProtein Sorting SignalsProtein Structure, TertiaryProtein TransportProtozoan ProteinsToxoplasmaMembrane ProteinsProtein Sorting SignalsProtozoan Proteinsendoplasmic reticulumGolgi apparatusmembrane proteinmitochondriaparasitesprotein localizationprotein trafficking

Identifiers

PMID27991712
PMCPMC5325807
OpenAlexW2562986297

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.