Evidence map›Paper›PMID 27990601›Full record

ArticleCurrent microbiology2017

Comparative Analysis of Proteome Patterns of Francisella tularensis Isolates from Patients and the Environment.

Murat Kasap, Aynur Karadenizli, Gürler Akpınar, Hüseyin Uzuner, Abula Ayimugu, Kübra Karaosmanoğlu, Doğanhan Kadir Er

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Current microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Rapid and Culture Free Identification ofFrontiers in microbiology · 2020
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Murat KasapMedical Biology Department/DEKART Proteomics Laboratory, Kocaeli University Medical Faculty, Umuttepe, Kocaeli, 41380, Turkey.
Aynur KaradenizliDepartment of Medical Microbiology, Kocaeli University Medical Faculty, Umuttepe, Kocaeli, 41380, Turkey. aynuryk2010@yahoo.com.
Gürler AkpınarMedical Biology Department/DEKART Proteomics Laboratory, Kocaeli University Medical Faculty, Umuttepe, Kocaeli, 41380, Turkey.
Hüseyin UzunerDepartment of Medical Microbiology, Kocaeli University Medical Faculty, Umuttepe, Kocaeli, 41380, Turkey.
Abula AyimuguDepartment of Biomedical Engineering, Kocaeli University Technology Faculty, Kocaeli, Turkey.
Kübra KaraosmanoğluDepartment of Biomedical Engineering, Kocaeli University Technology Faculty, Kocaeli, Turkey.
Doğanhan Kadir ErDepartment of Medical Microbiology, Kocaeli University Medical Faculty, Umuttepe, Kocaeli, 41380, Turkey.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Francisella tularensis is the causative agent of tularemia. Although major contributors and the main mechanism of the virulence are well known, some of the molecular details are still missing. Proteomics studies regarding F. tularensis have provided snapshot pictures of the organism grown under different culture conditions to understand the mechanism of virulence. In general, such studies were carried out with standard strains e.g., LVS and did not involve comparisons of F. tularensis isolates from either clinical or environmental sources. In this study, we performed two-dimensional gel electrophoresis (2DE)-based proteomic analysis and compared the protein profiles of the F. tularensis subsp. holarctica strains isolated from the clinical and the environmental samples. Regulations were detected in 14 spots when twofold regulation criteria were applied. The regulated protein spots were subjected to MALDI-TOF/TOF analysis and identified. Classification of the identified proteins based on metabolic functions revealed that the translation machinery was the most varying metabolic processes among the isolates. Using normalized protein spot intensities, PCA analysis was also performed. The results indicated that the strain isolated from water source was different then the strains isolated from the patients. Most interestingly, the isolates were strikingly distinguishable from the standard NCTC 10857 strain.

Indexed as

Environmental MicrobiologyElectrophoresis, Gel, Two-DimensionalFrancisella tularensisHumansProteomeSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTularemiaProteome

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.