Evidence map›Paper›PMID 27989416›Full record

ArticleBioorganic & medicinal chemistry2017

Towards the development of activity-based probes for detection of lysine-specific demethylase-1 activity.

Maria E Ourailidou, Alessia Lenoci, Clemens Zwergel, Dante Rotili, Antonello Mai, Frank J Dekker

Open access · bronzeAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Chemical modulation ofWellcome open research · 2023
    Article
  4. Activity-Based Protein Profiling (ABPP) of Oxidoreductases.Chembiochem : a European journal of chemical biology · 2021
    Review
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Maria E OurailidouDepartment of Chemical and Pharmaceutical Biology, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, Groningen 9713 AV, The Netherlands.
Alessia LenociDepartment of Drug Chemistry and Technologies, 'Sapienza' University, P.le A. Moro 5, 00185 Rome, Italy.
Clemens ZwergelDepartment of Drug Chemistry and Technologies, 'Sapienza' University, P.le A. Moro 5, 00185 Rome, Italy.
Dante RotiliDepartment of Drug Chemistry and Technologies, 'Sapienza' University, P.le A. Moro 5, 00185 Rome, Italy.
Antonello MaiDepartment of Drug Chemistry and Technologies, 'Sapienza' University, P.le A. Moro 5, 00185 Rome, Italy; Pasteur Institute, Cenci Bolognetti Foundation, 'Sapienza' University, P.le A. Moro 5, 00185 Rome, Italy. Electronic address: antonello.mai@uniroma1.it.
Frank J DekkerDepartment of Chemical and Pharmaceutical Biology, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, Groningen 9713 AV, The Netherlands. Electronic address: f.j.dekker@rug.nl.
Sapienza University of Rome · ITUniversity of Groningen · NLIstituto Pasteur · IT

Funding

European Research Council 309782
6 · The paper itself

Abstract

The implications of lysine-specific demethylase-1 (LSD1) in tumorigenesis have urged scientists to develop diagnostic tools in order to explore the function of this enzyme. In this work, we present our efforts on the development of tranylcypromine (TCP)-based functionalized probes for activity-based protein profiling (ABPP) of LSD1 activity. Biotinylated forms of selected compounds enabled dose-dependent enzyme labeling of recombinant LSD1. However, treatment with LSD1 inhibitors did not clearly reduce the LSD1 labeling efficiency thus indicating that labeling using these probes is not activity dependent. This calls for alternative strategies to develop probes for ABPP of the enzyme LSD1.

Indexed as

Dose-Response Relationship, DrugEnzyme InhibitorsHeLa CellsHistone DemethylasesHumansMolecular ProbesMolecular StructureStructure-Activity RelationshipTranylcypromineEnzyme InhibitorsHistone DemethylasesKDM1A protein, humanMolecular ProbesTranylcypromineEnzyme labelingIrreversible inhibitionLysine demethylationTranylcypromineTumorigenesis

Identifiers

PMID27989416
PMCPMC5292237
OpenAlexW2557682157

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.