Evidence map›Paper›PMID 27988485›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2017

Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses.

Shawn R Lockhart, Kizee A Etienne, Snigdha Vallabhaneni, Joveria Farooqi, Anuradha Chowdhary, Nelesh P Govender, Arnaldo Lopes Colombo, Belinda Calvo, Christina A Cuomo, Christopher A Desjardins and 9 more

Erratum issuedOpen access · greenAbstract readMulticenter Study
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1,015 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,015citing papers in PubMed, 2 pooled it
83.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,015 citing papers in PubMed, 2 syntheses or guidelines pooled it, 1,583 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pharmacological advances inJournal of enzyme inhibition and medicinal chemistry · 2026
    Review
  4. Article
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  7. Review
  8. Clade Differentiation ofAnnals of laboratory medicine · 2026
    Article
  9. Article
  10. A Synthetic β-Mannan Epitope Enables Immunization and Detection of Candida auris.Angewandte Chemie (International ed. in English) · 2026
    Article
  11. Review
  12. Article
  13. Article
  14. Climate change and antimicrobial resistance.Nature reviews. Microbiology · 2026
    Review
  15. First Case of Bloodstream Infection byAnnals of laboratory medicine · 2026
    Article
  16. Proteome Remodelling inJournal of fungi (Basel, Switzerland) · 2026
    Article
  17. Article
  18. Article
  19. Article
  20. Review

955 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 6 countries.

Shawn R LockhartMycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia; gyi2@cdc.gov.
Kizee A EtienneMycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Snigdha VallabhaneniMycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Joveria FarooqiDepartment of Pathology and Laboratory Medicine, Aga Khan University, Karachi, and.
Anuradha ChowdharyDepartment of Medical Mycology, Vallabhbhai Patel Chest Institute, University of Delhi, India.
Nelesh P GovenderNational Institute for Communicable Diseases-Centre for Opportunistic, Tropical and Hospital Infections, a Division of the National Health Laboratory Service, Johannesburg, South Africa.
Arnaldo Lopes ColomboDivision of Infectious Diseases, Federal University of São Paulo-UNIFESP, Brazil.
Belinda CalvoDepartment of Infectious Diseases, School of Medicine, Universidad del Zulia, Maracaibo, Venezuela.
Christina A CuomoBroad Institute, MIT and Harvard, Cambridge, Massachusetts.
Christopher A DesjardinsBroad Institute, MIT and Harvard, Cambridge, Massachusetts.
Elizabeth L BerkowMycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Mariana CastanheiraJMI Laboratories, North Liberty, Iowa.
Rindidzani E MagoboNational Institute for Communicable Diseases-Centre for Opportunistic, Tropical and Hospital Infections, a Division of the National Health Laboratory Service, Johannesburg, South Africa.
Kauser JabeenDepartment of Pathology and Laboratory Medicine, Aga Khan University, Karachi, and.
Rana J AsgharCenters for Disease Control and Prevention Field Epidemiology and Laboratory Training Program, Islamabad, Pakistan.
Jacques F MeisDepartment of Medical Microbiology and Infectious Diseases, Canisius-Wilhelmina Hospital, and.
Brendan JacksonMycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Tom ChillerMycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Anastasia P LitvintsevaMycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Centers for Disease Control and Prevention · USBroad Institute · USNational Health Laboratory Service · ZAJMI Laboratories · USRadboud University Nijmegen · NLUniversidade Federal de São Paulo · BRUniversity of Delhi · INUniversity of Zulia · VE

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI CUOMO, CHRISTINA A · 2014 to 2024
$66.5M
NIAID NIH HHS U19 AI110818
6 · The paper itself

Abstract

backgroundCandida auris, a multidrug-resistant yeast that causes invasive infections, was first described in 2009 in Japan and has since been reported from several countries.

methodsTo understand the global emergence and epidemiology of C. auris, we obtained isolates from 54 patients with C. auris infection from Pakistan, India, South Africa, and Venezuela during 2012-2015 and the type specimen from Japan. Patient information was available for 41 of the isolates. We conducted antifungal susceptibility testing and whole-genome sequencing (WGS).

resultsAvailable clinical information revealed that 41% of patients had diabetes mellitus, 51% had undergone recent surgery, 73% had a central venous catheter, and 41% were receiving systemic antifungal therapy when C. auris was isolated. The median time from admission to infection was 19 days (interquartile range, 9-36 days), 61% of patients had bloodstream infection, and 59% died. Using stringent break points, 93% of isolates were resistant to fluconazole, 35% to amphotericin B, and 7% to echinocandins; 41% were resistant to 2 antifungal classes and 4% were resistant to 3 classes. WGS demonstrated that isolates were grouped into unique clades by geographic region. Clades were separated by thousands of single-nucleotide polymorphisms, but within each clade isolates were clonal. Different mutations in ERG11 were associated with azole resistance in each geographic clade.

conclusionsC. auris is an emerging healthcare-associated pathogen associated with high mortality. Treatment options are limited, due to antifungal resistance. WGS analysis suggests nearly simultaneous, and recent, independent emergence of different clonal populations on 3 continents. Risk factors and transmission mechanisms need to be elucidated to guide control measures.

Indexed as

Drug Resistance, FungalDrug Resistance, MultipleAdolescentAdultAgedAntifungal AgentsCandidaCandidemiaCandidiasisChildChild, PreschoolCytochrome P-450 Enzyme SystemDNA, Ribosomal SpacerFemaleGenome, FungalGlobal HealthAntifungal AgentsCytochrome P-450 Enzyme SystemDNA, Ribosomal SpacerRNA, Ribosomal, 28Samphotericin B resistanceCandida auriscandidemiafluconazole resistancewhole genome sequence typing.

Identifiers

PMID27988485
PMCPMC5215215
OpenAlexW2536287248

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.