Evidence map›Paper›PMID 27986392›Full record

ReviewTrends in immunology2017

Solving Immunology?

Yoram Vodovotz, Ashley Xia, Elizabeth L Read, Josep Bassaganya-Riera, David A Hafler, Eduardo Sontag, Jin Wang, John S Tsang, Judy D Day, Steven H Kleinstein and 4 more

Open access · greenAbstract readReview
In one paragraph

Review in Trends in immunology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. Mechanistic model for booster doses effectiveness in healthy, cancer, and immunosuppressed patients infected with SARS-CoV-2.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Review
  9. A roadmap for translational cancer glycoimmunology at single cell resolution.Journal of experimental & clinical cancer research : CR · 2022
    Review
  10. Mapping CAR T-Cell Design Space Using Agent-Based Models.Frontiers in molecular biosciences · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Aging-induced fragility of the immune system.Journal of theoretical biology · 2021
    Article
  15. A case for the reuse and adaptation of mechanistic computational models to study transplant immunology.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 13 institutions in 2 countries.

Yoram VodovotzDepartments of Surgery, Immunology, Computational and Systems Biology, Clinical and Translational Science, and Communication Science and Disorders, and McGowan Institute for Regenerative Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Ashley XiaDivision of Allergy, Immunology and Transplantation, National Institute of Allergy and Infectious Diseases National Institutes of Health, 5601 Fishers Lane, Room 7A78, MSC 9828, Rockville, MD 20852, USA; Current address: Molecular Transducers of Physical Activities (MoTrPAC) Division of Diabetes, Endocrinology, & Metabolic Diseases (DEM), National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), National Institutes of Health (NIH), 6707 Democracy Blvd, RM 6074, Bethesda, MD 20817, USA.
Elizabeth L ReadDepartment of Chemical Engineering & Materials Science, Department of Molecular Biology & Biochemistry, University of California, Irvine, CA 92697, USA.
Josep Bassaganya-RieraBiocomplexity Institute of Virginia Tech, 1015 Life Sciences Circle, Blacksburg, VA 24060, USA.
David A HaflerDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA.
Eduardo SontagDepartment of Mathematics, Institute for Quantitative Biology, and Cancer Institute of NJ, Rutgers University, New Brunswick, NJ 08903, USA.
Jin WangState Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry of Chinese Academy of Sciences, Changchun 130022, China; Department of Chemistry and Physics, Stony Brook University, Stony Brook, NY 11794-3400, USA.
John S TsangSystems Genomics and Bioinformatics Unit, Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, Trans-NIH Center for Human Immunology, National Institutes of Health, Bethesda, MD 20892, USA.
Judy D DayDepartments of Mathematics and Electrical Engineering & Computer Science, National Institute for Mathematical and Biological Synthesis, University of Tennessee, Knoxville, TN 37996, USA.
Steven H KleinsteinDepartment of Pathology and Department of Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA; Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06511, USA.
Atul J ButteInstitute for Computational Health Sciences, University of California, San Francisco, Mission Hall 550 16th Street, 4th Floor, Box 0110, San Francisco, CA 94158-2549, USA.
Matthew C AltmanDepartment of Allergy and Infectious Diseases, University of Washington, Seattle, WA 98109, USA.
Ross HammondCenter on Social Dynamics & Policy, Economic Studies Program, The Brookings Institution, Washington DC 20036, USA.
Stuart C SealfonCenter for Advanced Research on Diagnostic Assays, Immunology Institute, Friedman Brain Institute, and Departments of Neurology, Neuroscience, Pharmacology, and Systems Therapeutics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Electronic address: stuart.sealfon@mssm.edu.
Yale University · USAllen Institute for Brain Science · USBrookings Institution · USChinese Academy of Sciences · CNMcGowan Institute for Regenerative Medicine · USNational Institute for Mathematical and Biological Synthesis · USNational Institute of Diabetes and Digestive and Kidney Diseases · USNational Institutes of Health · USRutgers, The State University of New Jersey · USUniversity of California, Irvine · USUniversity of California, San Francisco · USUniversity of Washington · USVirginia Tech · US

Funding

Integrative analysis and modeling of human immune responses and pathologiesZIAAI001152 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI TSANG, JOHN · 2011 to 2022
$14.1M
Project I: Immunity to Influenza in Primary Lung Epithelial CellsU19AI117873 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HAYOT, FERNAND · 2015 to 2019
$8.6M
Systems biology of macrophage activation and plasticity - from single cells to information propagation in networksZIAAI001143 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI TSANG, JOHN · 2011 to 2020
$4.0M
NIAID NIH HHS HHSN272201200028CNIAID NIH HHS U19 AI117873
6 · The paper itself

Abstract

Emergent responses of the immune system result from the integration of molecular and cellular networks over time and across multiple organs. High-content and high-throughput analysis technologies, concomitantly with data-driven and mechanistic modeling, hold promise for the systematic interrogation of these complex pathways. However, connecting genetic variation and molecular mechanisms to individual phenotypes and health outcomes has proven elusive. Gaps remain in data, and disagreements persist about the value of mechanistic modeling for immunology. Here, we present the perspectives that emerged from the National Institute of Allergy and Infectious Disease (NIAID) workshop 'Complex Systems Science, Modeling and Immunity' and subsequent discussions regarding the potential synergy of high-throughput data acquisition, data-driven modeling, and mechanistic modeling to define new mechanisms of immunological disease and to accelerate the translation of these insights into therapies.

Indexed as

Database Management SystemsImmune SystemImmunityModels, ImmunologicalSystems BiologyAnimalsComputational BiologyHigh-Throughput Screening AssaysHumansTranslational Research, Biomedicalautoimmune diseaseconferencemathematical modelingpersonalized medicinetranslation

Identifiers

PMID27986392
PMCPMC5695553
OpenAlexW4256221916

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.