Evidence map›Paper›PMID 27984731›Full record

ArticleCell2016

Single-Molecule Real-Time 3D Imaging of the Transcription Cycle by Modulation Interferometry.

Guanshi Wang, Jesse Hauver, Zachary Thomas, Seth A Darst, Alexandros Pertsinidis

Abstract read
In one paragraph

Article in Cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. RNAP Promoter Search and Transcription Kinetics in LiveThe journal of physical chemistry. B · 2023
    Article
  4. Article
  5. Article
  6. Imaging the endocannabinoid signaling system.Journal of neuroscience methods · 2022
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Real-time 3D single molecule tracking.Nature communications · 2020
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Guanshi WangStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; BCMB Graduate Program, Weill Cornell Medicine, Cornell University, New York, NY 10065, USA.
Jesse HauverStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Tri-Institutional PhD Program in Chemical Biology, New York, NY 10065, USA; The Rockefeller University, New York, NY 10065, USA.
Zachary ThomasStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Seth A DarstThe Rockefeller University, New York, NY 10065, USA.
Alexandros PertsinidisStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA. Electronic address: pertsina@mskcc.org.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Structure, function, and regulation of the bacterial transcription cycleR35GM118130 · NIGMS · ROCKEFELLER UNIVERSITY · PI DARST, SETH A. · 2016 to 2025
$8.9M
E COLI RNA POLYMERASE SUBUNIT--STRUCTURE/FUNCTIONR01GM053759 · NIGMS · ROCKEFELLER UNIVERSITY · PI DARST, SETH A. · 1996 to 2015
$6.9M
Understanding Gene Transcription from First-Principles: A single-molecule studyDP2GM105443 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI PERTSINIDIS, ALEXANDROS · 2012 to 2012
$2.6M
NCI NIH HHS P30 CA008748NIGMS NIH HHS DP2 GM105443NIGMS NIH HHS R01 GM053759NIGMS NIH HHS R35 GM118130
6 · The paper itself

Abstract

Many essential cellular processes, such as gene control, employ elaborate mechanisms involving the coordination of large, multi-component molecular assemblies. Few structural biology tools presently have the combined spatial-temporal resolution and molecular specificity required to capture the movement, conformational changes, and subunit association-dissociation kinetics, three fundamental elements of how such intricate molecular machines work. Here, we report a 3D single-molecule super-resolution imaging study using modulation interferometry and phase-sensitive detection that achieves <2 nm axial localization precision, well below the few-nanometer-sized individual protein components. To illustrate the capability of this technique in probing the dynamics of complex macromolecular machines, we visualize the movement of individual multi-subunit E. coli RNA polymerases through the complete transcription cycle, dissect the kinetics of the initiation-elongation transition, and determine the fate of σ

Indexed as

Transcription, GeneticDNA-Directed RNA PolymerasesEscherichia coliHumansImaging, Three-DimensionalInterferometrySingle Molecule ImagingDNA-Directed RNA Polymerasesaxial localizationholoenzymeinterferometrynuclear pore complexRNA polymerasesigma factorsingle-moleculesuper-resolution imagingtranscriptiontranscription cycle

Identifiers

PMID27984731
PMCPMC5444671

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.