Evidence map›Paper›PMID 27983480›Full record

ArticleThe Journal of general virology2017

Characterization of a triple-recombinant, reassortant rotavirus strain from the Dominican Republic.

Mathew D Esona, Sunando Roy, Kunchala Rungsrisuriyachai, Jacqueline Sanchez, Lina Vasquez, Virgen Gomez, Lourdes Aviles Rios, Michael D Bowen, Marietta Vazquez

Abstract read
In one paragraph

Article in The Journal of general virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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  10. Emergency Services of Viral RNAs: Repair and Remodeling.Microbiology and molecular biology reviews : MMBR · 2018
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mathew D EsonaCenters for Disease Control and Prevention, Atlanta, GA, USA.
Sunando RoyCenters for Disease Control and Prevention, Atlanta, GA, USA.
Kunchala RungsrisuriyachaiCenters for Disease Control and Prevention, Atlanta, GA, USA.
Jacqueline SanchezHospital Infantil Dr Robert Reid Cabral, Santo Domingo, Dominican Republic.
Lina VasquezHospital Infantil Dr Robert Reid Cabral, Santo Domingo, Dominican Republic.
Virgen GomezHospital Infantil Dr Robert Reid Cabral, Santo Domingo, Dominican Republic.
Lourdes Aviles RiosYale School of Medicine, New Haven, CT, USA.
Michael D BowenCenters for Disease Control and Prevention, Atlanta, GA, USA.
Marietta VazquezYale School of Medicine, New Haven, CT, USA.

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

We report the genome of a novel human triple-recombinant G4P[6-8_R] mono-reassortant strain identified in a stool sample from the Dominican Republic during routine facility-based rotavirus strain surveillance. The strain was designated as RVA/Human-wt/DOM/2013840364/2013/G4P[6-8_R], with a genomic constellation of G4-P[6-8_R]-I1-R1-C1-M1-(A1-A8_R)-N1-(T1-T7_R)-E1-H1. Recombinant gene segments NSP1 and NSP3 were generated as a result of recombination between genogroup 1 rotavirus A1 human strain and a genotype A8 porcine strain and between genogroup 1 rotavirus T1 human strain and a genotype T7 bovine strain, respectively. Analyses of the RNA secondary structures of gene segment VP4, NSP1 and NSP3 showed that all the recombinant regions appear to start in a loop (single-stranded) region and terminate in a stem (double-stranded) structure. Also, the VP7 gene occupied lineage VII within the G4 genotypes consisting of mostly porcine or porcine-like G4 strains, suggesting the occurrence of reassortment. The remaining gene segments clustered phylogenetically with genogroup 1 strains. This exchange of whole or partial genetic materials between rotaviruses by recombination and reassortment contributes directly to their diversification, adaptation and evolution.

Indexed as

Genome, ViralRecombination, GeneticAdaptation, PhysiologicalAnimalsCattleDominican RepublicEpidemiological MonitoringEvolution, MolecularFecesGastroenteritisGenetic VariationGenomicsGenotypeHumansMultigene FamilyNucleic Acid Conformationnsp1 protein, RotavirusNSP3 protein, RotavirusRNA, ViralViral Nonstructural Proteins

Identifiers

PMID27983480
PMCPMC5720362

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.