Evidence map›Paper›PMID 27982725›Full record

ArticleEpigenetics2017

Differential analysis of genome-wide methylation and gene expression in mesenchymal stem cells of patients with fractures and osteoarthritis.

Alvaro Del Real, Flor M Pérez-Campo, Agustín F Fernández, Carolina Sañudo, Carmen G Ibarbia, María I Pérez-Núñez, Wim Van Criekinge, Maarten Braspenning, María A Alonso, Mario F Fraga and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 79 citations in OpenAlex.

  1. Lgr6Genes & diseases · 2026
    Review
  2. Epigenetic Patterns in Musculoskeletal Disease: Methylation ofCurrent issues in molecular biology · 2026
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  12. Review
  13. The essential roles of mGenes & diseases · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Alvaro Del Reala Department of Medicine and Psychiatry , University of Cantabria, and Service of Internal Medicine, Hospital U.M. Valdecilla-IDIVAL , Santander , Spain.
Flor M Pérez-Campoa Department of Medicine and Psychiatry , University of Cantabria, and Service of Internal Medicine, Hospital U.M. Valdecilla-IDIVAL , Santander , Spain.
Agustín F Fernándezb Cancer Epigenetics Laboratory , Institute of Oncology of Asturias (IUOPA), HUCA, University of Oviedo , Oviedo , Spain.
Carolina Sañudoa Department of Medicine and Psychiatry , University of Cantabria, and Service of Internal Medicine, Hospital U.M. Valdecilla-IDIVAL , Santander , Spain.
Carmen G Ibarbiaa Department of Medicine and Psychiatry , University of Cantabria, and Service of Internal Medicine, Hospital U.M. Valdecilla-IDIVAL , Santander , Spain.
María I Pérez-Núñezc Service of Traumatology and Orthopedic Surgery , Hospital U.M. Valdecilla, University of Cantabria , Santander , Spain.
Wim Van Criekinged Mathematical Modelling , Statistics and Bio-informatics, Faculty Bioscience Engineering, University Ghent , Gent , Belgium.
Maarten Braspenninge NXT-Dx , Gent , Belgium.
María A Alonsoc Service of Traumatology and Orthopedic Surgery , Hospital U.M. Valdecilla, University of Cantabria , Santander , Spain.
Mario F Fragab Cancer Epigenetics Laboratory , Institute of Oncology of Asturias (IUOPA), HUCA, University of Oviedo , Oviedo , Spain.
Jose A Rianchoa Department of Medicine and Psychiatry , University of Cantabria, and Service of Internal Medicine, Hospital U.M. Valdecilla-IDIVAL , Santander , Spain.
Universidad de Cantabria · ESUniversidad de Oviedo · ESGhent University · BEInstituto de Investigación Marqués de Valdecilla · ESMarqués de Valdecilla University Hospital · ESNXP (Belgium) · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Insufficient activity of the bone-forming osteoblasts leads to low bone mass and predisposes to fragility fractures. The functional capacity of human mesenchymal stem cells (hMSCs), the precursors of osteoblasts, may be compromised in elderly individuals, in relation with the epigenetic changes associated with aging. However, the role of hMSCs in the pathogenesis of osteoporosis is still unclear. Therefore, we aimed to characterize the genome-wide methylation and gene expression signatures and the differentiation capacity of hMSCs from patients with hip fractures. We obtained hMSCs from the femoral heads of women undergoing hip replacement due to hip fractures and controls with hip osteoarthritis. DNA methylation was explored with the Infinium 450K bead array. Transcriptome analysis was done by RNA sequencing. The genomic analyses revealed that most differentially methylated loci were situated in genomic regions with enhancer activity, distant from gene bodies and promoters. These regions were associated with differentially expressed genes enriched in pathways related to hMSC growth and osteoblast differentiation. hMSCs from patients with fractures showed enhanced proliferation and upregulation of the osteogenic drivers RUNX2/OSX. Also, they showed some signs of accelerated methylation aging. When cultured in osteogenic medium, hMSCs from patients with fractures showed an impaired differentiation capacity, with reduced alkaline phosphatase activity and poor accumulation of a mineralized matrix. Our results point to 2 areas of potential interest for discovering new therapeutic targets for low bone mass disorders and bone regeneration: the mechanisms stimulating MSCs proliferation after fracture and those impairing their terminal differentiation.

Indexed as

DNA MethylationTranscriptomeAgedAged, 80 and overCase-Control StudiesCell ProliferationCells, CulturedFemaleGenome-Wide Association StudyHumansMesenchymal Stem CellsMiddle AgedOsteoporotic FracturesEpigeneticsosteoarthritisosteoporosisstem cellstranscription factors

Identifiers

PMID27982725
PMCPMC5330439
OpenAlexW2567374865

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.