Evidence map›Paper›PMID 27982092›Full record

ArticleScientific reports2016

Incomplete DRB4-dependence of the DCL4-mediated antiviral defense.

Xiaofeng Zhang, Xiuchun Zhang, Kunxin Wu, Zhixin Liu, Dawei Li, Feng Qu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Xiaofeng ZhangInstitute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences/ Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China.
Xiuchun ZhangInstitute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences/ Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China.
Kunxin WuInstitute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences/ Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China.
Zhixin LiuInstitute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences/ Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China.
Dawei LiState Key Laboratory of Agro-Biotechnology, College of Biological Sciences, China Agricultural University, China.
Feng QuDepartment of Plant Pathology, The Ohio State University, Wooster, Ohio, USA.
China Agricultural University · CNChinese Academy of Tropical Agricultural Sciences · CNThe Ohio State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The double-stranded RNA-binding protein DRB4 of Arabidopsis was shown previously to contribute to the DICER-LIKE 4 (DCL4)-mediated biogenesis of viral small interfering RNAs (vsiRNAs) of 21 nucleotides (nt) in size. However, it is unclear whether all 21-nt vsiRNAs are dependent on this DRB4-DCL4 partnership. To resolve this question, we generated dcl2drb4 and dcl4drb4 double knockout mutants, and subjected them to infections with CPB-CC-PDS, a turnip crinkle virus mutant capable of inducing silencing of the PHYTOENE DESATURASE gene. The dcl2drb4 double knockouts caused a far smaller loss of antiviral silencing than dcl2dcl4. In addition, although both drb4 and dcl4 single mutants permitted a consistent (but small) increase in viral RNA levels, the drb4 mutant correlated with a less pronounced reduction of 21-nt vsiRNAs. Therefore, a substantial subset of DCL4 antiviral activity is DRB4-independent, and may involve other DRB proteins that compensate for loss of DRB4.

Indexed as

ArabidopsisArabidopsis ProteinsCarmovirusCell Cycle ProteinsOxidoreductasesPlant LeavesPlants, Genetically ModifiedRibonuclease IIIRNA-Binding ProteinsRNA InterferenceRNA, Small InterferingRNA, ViralArabidopsis ProteinsCell Cycle ProteinsDCL2 protein, ArabidopsisDCL4 protein, ArabidopsisDRB4 protein, ArabidopsisOxidoreductasesphytoene dehydrogenaseRibonuclease IIIRNA-Binding ProteinsRNA, Small InterferingRNA, Viral

Identifiers

PMID27982092
PMCPMC5159819
OpenAlexW2563707005

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.