Evidence map›Paper›PMID 27981894›Full record

ArticleRNA biology2017

Knockout of miR-221 and miR-222 reveals common and specific targets for paralogous miRNAs.

Geon Jeong, Yeong-Hwan Lim, Nam Joong Kim, Gabbine Wee, Young-Kook Kim

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Geon Jeonga Department of Biochemistry , Chonnam National University Medical School , Gwangju , Korea.
Yeong-Hwan Lima Department of Biochemistry , Chonnam National University Medical School , Gwangju , Korea.
Nam Joong Kima Department of Biochemistry , Chonnam National University Medical School , Gwangju , Korea.
Gabbine Weed Daegu Gyeongbuk Medical Innovation Foundation , Daegu , Korea.
Young-Kook Kima Department of Biochemistry , Chonnam National University Medical School , Gwangju , Korea.
Chonnam National University · KRDaegu-Gyeongbuk Medical Innovation Foundation · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNAs (miRNAs) regulate the expression of mRNA through sequence-specific binding of the 3' untranslated region (UTR). The seed sequence of miRNAs is the key determinant for target site recognition. Paralogous miRNAs, which share the same seed sequences but differ in their 3' regions, are known to regulate largely overlapping groups of mRNAs. However, no study has analyzed functional differences between paralogous miRNAs with proper experimental methods. In this study, we compared the targets of paralogous miRNAs, miR-221 and miR-222. Using a nuclease-mediated genome engineering technique, we established knockout cell lines for these miRNAs, and precisely analyzed differences in target regulation. We found that miR-221 and miR-222 suppress the previously identified targets, CDKN1B and CDKN1C, differentially. Whereas both miRNAs suppressed CDKN1B, only miR-221 suppressed CDKN1C. From transcriptome analyses, we found that several different target mRNAs were regulated by each of miR-221 and miR-222 independently, although a large number of mRNAs responded commonly to miR-221 and miR-222. This is the first study to compare the mRNA regulations by paralogous miRNAs and illustrate that paralogous miRNAs with the same seed sequence also have difference in target regulation.

Indexed as

Gene Knockout TechniquesRNA InterferenceBase SequenceCluster AnalysisGene ExpressionGene Expression ProfilingGene Expression RegulationGenes, ReporterHigh-Throughput Nucleotide SequencingHumansMicroRNAsNucleic Acid ConformationRNA, MessengerTranscription Activator-Like Effector NucleasesTranscriptomeMicroRNAsMIR221, humanMIR222, humanRNA, MessengerTranscription Activator-Like Effector NucleasesKnockoutmicroRNAmiR-221miR-222TALEN

Identifiers

PMID27981894
PMCPMC5324760
OpenAlexW2566107419

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.