Evidence map›Paper›PMID 27981239›Full record

ArticlemSystems

Ionic Liquids Impact the Bioenergy Feedstock-Degrading Microbiome and Transcription of Enzymes Relevant to Polysaccharide Hydrolysis.

Yu-Wei Wu, Brendan Higgins, Chaowei Yu, Amitha P Reddy, Shannon Ceballos, Lawrence D Joh, Blake A Simmons, Steven W Singer, Jean S VanderGheynst

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mSystems. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yu-Wei WuJoint BioEnergy Institute, Emeryville, California, USA; Graduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei, Taiwan.
Brendan HigginsBiological and Agricultural Engineering, University of California, Davis, Davis, California, USA; Biosystems Engineering, Auburn University, Auburn, Alabama, USA.ORCID 0000-0001-6854-9612
Chaowei YuBiological and Agricultural Engineering, University of California, Davis, Davis, California, USA.
Amitha P ReddyBiological and Agricultural Engineering, University of California, Davis, Davis, California, USA.
Shannon CeballosBiological and Agricultural Engineering, University of California, Davis, Davis, California, USA.
Lawrence D JohBiological and Agricultural Engineering, University of California, Davis, Davis, California, USA.
Blake A SimmonsJoint BioEnergy Institute, Emeryville, California, USA; Biological and Materials Science Center, Sandia National Laboratories, Livermore, California, USA.
Steven W SingerJoint BioEnergy Institute, Emeryville, California, USA; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Jean S VanderGheynstJoint BioEnergy Institute, Emeryville, California, USA; Biological and Agricultural Engineering, University of California, Davis, Davis, California, USA.ORCID 0000-0002-1455-8254

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ionic liquid (IL) pretreatment is a promising approach for the conversion of lignocellulose to biofuels. The toxicity of residual IL, however, negatively impacts the performance of industrial enzymes and microorganisms in hydrolysis and fermentation. In this study, a thermophilic microbial community was cultured on switchgrass amended with various levels of the ionic liquid 1-ethyl-3-methylimidazolium acetate. Changes in the microbial community composition and transcription of genes relevant to IL tolerance and lignocellulose hydrolysis were quantified. Increasing the level of IL to 0.1% (wt) led to increased levels of relative abundance and transcription in organisms of the phylum

Indexed as

1-ethyl-3-methylimidazolium acetatecellulasehemicellulaseionic liquid

Identifiers

PMID27981239
PMCPMC5155067

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.