Evidence map›Paper›PMID 27980696›Full record

ArticleClinical epigenetics2016

Characterization of TET and IDH gene expression in chronic lymphocytic leukemia: comparison with normal B cells and prognostic significance.

Michaël Van Damme, Emerence Crompot, Nathalie Meuleman, Marie Maerevoet, Philippe Mineur, Dominique Bron, Laurence Lagneaux, Basile Stamatopoulos

Open access · goldAbstract readComparative Study
In one paragraph

Article in Clinical epigenetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Lower Levels of TET2 Gene Expression, with a Higher Level of TET2 Promoter Methylation in Patients with AML; Evidence for the Role of Aberrant Methylation in AML Pathogenesis.Indian journal of hematology & blood transfusion : an official journal of Indian Society of Hematology and Blood Transfusion · 2024
    Article
  3. Review
  4. Article
  5. Review
  6. Ten-eleven translocase: key regulator of the methylation landscape in cancer.Journal of cancer research and clinical oncology · 2021
    Review
  7. Article
  8. Article
  9. Changes inJournal of hematology · 2019
    Article
  10. Emerging epigenetic-modulating therapies in lymphoma.Nature reviews. Clinical oncology · 2019
    Review
  11. Review
  12. The TET enzymes.Cellular and molecular life sciences : CMLS · 2018
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Michaël Van DammeLaboratory of Clinical Cell Therapy, ULB Cancer Research Center (U-CRC), Institut Jules Bordet, Université Libre de Bruxelles (ULB), Route de Lennik, 808, 1070 Brussels, Belgium.
Emerence CrompotLaboratory of Clinical Cell Therapy, ULB Cancer Research Center (U-CRC), Institut Jules Bordet, Université Libre de Bruxelles (ULB), Route de Lennik, 808, 1070 Brussels, Belgium.
Nathalie MeulemanDepartment of Hematology (U-CRC), Institut Jules Bordet, Université Libre de Bruxelles (ULB), Brussels, Belgium.
Marie MaerevoetDepartment of Hematology (U-CRC), Institut Jules Bordet, Université Libre de Bruxelles (ULB), Brussels, Belgium.
Philippe MineurDepartment of Hemato-Oncology, Grand Hôpital de Charleroi, Gilly, Belgium.
Dominique BronDepartment of Hematology (U-CRC), Institut Jules Bordet, Université Libre de Bruxelles (ULB), Brussels, Belgium.
Laurence LagneauxLaboratory of Clinical Cell Therapy, ULB Cancer Research Center (U-CRC), Institut Jules Bordet, Université Libre de Bruxelles (ULB), Route de Lennik, 808, 1070 Brussels, Belgium.
Basile StamatopoulosLaboratory of Clinical Cell Therapy, ULB Cancer Research Center (U-CRC), Institut Jules Bordet, Université Libre de Bruxelles (ULB), Route de Lennik, 808, 1070 Brussels, Belgium.
Université Libre de Bruxelles · BEInstitut Jules Bordet · BEGrand Charleroi Hospital · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundChronic lymphocytic leukemia (CLL) is the most common hematological malignancy in western countries, characterized by a heterogeneous clinical course. Although genetic studies have identified chromosomal aberrations or specific mutations, epigenetic changes have been poorly characterized in CLL.

methodsWe assessed ten-eleven translocations (TET) 1, 2, and 3, isocitrate dehydrogenase (IDH) 1, and 2 messenger RNA (mRNA) expression using real-time PCR on purified leukemic B cells from 214 CLL patients (median follow-up = 75 months, range 1-380), normal peripheral blood B cells (

resultsTET 1 and 3 and IDH2 were decreased in CLL cells compared with healthy B cells (

conclusionsDespite a slight deregulation in CLL cells compared with normal B cells, we identified a significant association between TET/IDH gene expression and prognosis, suggesting that epigenetic changes could potentially be associated with disease progression. Moreover, despite an identical %5-hmC, TET gene expression was influenced by contact with BMSC confirming the crucial role of the microenvironment in CLL pathogenesis.

Indexed as

Gene Expression5-MethylcytosineAdultAgedAged, 80 and overB-LymphocytesCoculture TechniquesDioxygenasesDNA-Binding ProteinsEpigenesis, GeneticFemaleGene Expression Regulation, LeukemicHumansIsocitrate DehydrogenaseLeukemia, Lymphocytic, Chronic, B-CellMale5-hydroxymethylcytosine5-MethylcytosineDioxygenasesDNA-Binding ProteinsIDH1 protein, humanIDH2 protein, humanIsocitrate DehydrogenaseMixed Function OxygenasesProto-Oncogene ProteinsTET1 protein, humanTET2 protein, humanTET3 protein, human5-HydroxymethylcytosineChronic lymphocytic leukemiaIDHPrognosisTET

Identifiers

PMID27980696
PMCPMC5141649
OpenAlexW2559921183

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.