Evidence map›Paper›PMID 27980065›Full record

ArticleNucleic acids research2017

CRISPR-Cas type I-A Cascade complex couples viral infection surveillance to host transcriptional regulation in the dependence of Csa3b.

Fei He, Gisle Vestergaard, Wenfang Peng, Qunxin She, Xu Peng

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 71 citations in OpenAlex.

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  14. Mechanisms regulating the CRISPR-Cas systems.Frontiers in microbiology · 2023
    Review
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  17. Article
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  20. Cyclic Tetra-Adenylate (cABiomolecules · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Fei HeArchaea Centre, Department of Biology, Copenhagen University, DK2200 Copenhagen N, Denmark.
Gisle VestergaardHelmholtz Zentrum München, Research Unit Environmental Genomics, Ingolstädter Landstraße 1, 85764 Oberschleißheim, Germany.
Wenfang PengArchaea Centre, Department of Biology, Copenhagen University, DK2200 Copenhagen N, Denmark.
Qunxin SheArchaea Centre, Department of Biology, Copenhagen University, DK2200 Copenhagen N, Denmark.
Xu PengArchaea Centre, Department of Biology, Copenhagen University, DK2200 Copenhagen N, Denmark.
University of Copenhagen · DKHelmholtz Zentrum München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CRISPR-Cas (clustered regularly interspaced short palindromic repeats and the associated genes) constitute adaptive immune systems in bacteria and archaea and they provide sequence specific immunity against foreign nucleic acids. CRISPR-Cas systems are activated by viral infection. However, little is known about how CRISPR-Cas systems are activated in response to viral infection or how their expression is controlled in the absence of viral infection. Here, we demonstrate that both the transcriptional regulator Csa3b, and the type I-A interference complex Cascade, are required to transcriptionally repress the interference gene cassette in the archaeon Sulfolobus. Csa3b binds to two palindromic repeat sites in the promoter region of the cassette and facilitates binding of the Cascade to the promoter region. Upon viral infection, loading of Cascade complexes onto crRNA-matching protospacers leads to relief of the transcriptional repression. Our data demonstrate a mechanism coupling CRISPR-Cas surveillance of protospacers to transcriptional regulation of the interference gene cassette thereby allowing a fast response to viral infection.

Indexed as

CRISPR-Cas SystemsGene Expression Regulation, ArchaealTranscription, GeneticArchaeaArchaeal ProteinsClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Associated ProteinsEvolution, MolecularGene Knockout TechniquesPhylogenySulfolobusArchaeal ProteinsCRISPR-Associated Proteins

Identifiers

PMID27980065
PMCPMC5389559
OpenAlexW2567387264

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.