Evidence map›Paper›PMID 27980020›Full record

ArticleBioscience reports2017

Identification of Ly2 members as antimicrobial peptides from zebrafish Danio rerio.

Xuemin Liu, Xuwen Cao, Su Wang, Guangdong Ji, Shicui Zhang, Hongyan Li

Open access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Xuemin LiuDepartment of Marine Biology, Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China.
Xuwen CaoDepartment of Marine Biology, Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China.
Su WangDepartment of Marine Biology, Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China.
Guangdong JiDepartment of Marine Biology, Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China jamesdong@ouc.edu.cn hongyanli@ouc.edu.cn.
Shicui ZhangDepartment of Marine Biology, Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China.
Hongyan LiDepartment of Marine Biology, Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China jamesdong@ouc.edu.cn hongyanli@ouc.edu.cn.
Ocean University of China · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The emergence of multidrug-resistant (MDR) microbes caused by overuse of antibiotics leads to urgent demands for novel antibiotics exploration. Our recent data showed that Ly2.1-3 (a novel lymphocyte antigen 6 (Ly6) gene cluster) were proteins with cationic nature and rich in cysteine content, that are characteristic of antimicrobial peptides (AMPs) and their expression were all significantly up-regulated after challenge with lipopolysaccharide (LPS). These strongly suggested that Ly2.1-3 are potential AMPs, but firm evidence are lacking. Here, we clearly showed that the recombinant proteins of Ly2.1-3 were capable of killing Gram-negative bacteria Aeromonas hydrophila and Escherichia coli, while they had little bactericidal activity against the Gram-positive bacteria Staphylococcus aureus and Bacillus subtilis We also showed that recombinant proteins Ly2.1-3 (rLy2.1-3) were able to bind to the Gram-negative bacteria A. hydrophila, E. coli and the microbial signature molecule LPS, but not to the Gram-positive bacteria S. aureus and B. subtilis as well as the microbial signature molecule LTA. Moreover, the Scatchard analysis revealed that rLy2.1-3 could specifically bind to LPS. Finally, we found that Ly2.1-3 were not cytotoxic to mammalian cells. All these together indicate that Ly2.1-3 can function as AMPs.

Indexed as

Aeromonas hydrophilaAnalysis of VarianceAnimalsAntigens, LyAntimicrobial Cationic PeptidesBacillus subtilisErythrocytesEscherichia coliHumansLipopolysaccharidesMiceProtein RefoldingRAW 264.7 CellsRecombinant ProteinsStaphylococcus aureusZebrafishAntigens, LyAntimicrobial Cationic PeptidesLipopolysaccharidesRecombinant ProteinsZebrafish ProteinsAntimicrobial peptidesLy6 gene clusterzebrafish Danio rerio

Identifiers

PMID27980020
PMCPMC5240587
OpenAlexW2562051153

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.