Evidence map›Paper›PMID 27978824›Full record

ArticleJournal of negative results in biomedicine2016

Unspecific binding of cRNA probe to plaques in two mouse models for Alzheimer's disease.

Anne Schaarschuch, Christoph Redies, Nicole Hertel, Molecular Anatomy and Dysfunction of Mouse Development Group

Open access · hybridAbstract read
In one paragraph

Article in Journal of negative results in biomedicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 84% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Anne SchaarschuchInstitute of Anatomy I, Friedrich Schiller University School of Medicine, Jena University Hospital, 07743, Jena, Germany.
Christoph RediesInstitute of Anatomy I, Friedrich Schiller University School of Medicine, Jena University Hospital, 07743, Jena, Germany.
Nicole HertelInstitute of Anatomy I, Friedrich Schiller University School of Medicine, Jena University Hospital, 07743, Jena, Germany. Nicole.Hertel@med.uni-jena.de.ORCID http://orcid.org/0000-0002-9631-2345
Molecular Anatomy and Dysfunction of Mouse Development Group
Jena University Hospital · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAlzheimer's disease (AD) is characterized by the pathological deposition of amyloid-β (Aβ) protein-containing plaques. Microglia and astrocytes are commonly attracted to the plaques by an unknown mechanism that may involve cell adhesion. One cell adhesion family of proteins, the cadherins, are widely expressed in the central nervous system. Therefore, our study was designed to map the expression of cadherins in AD mouse brains. A particular focus was on plaques because diverse mRNA-species were found in plaques and their surrounding area in brains of AD patients.

methodsIn this study, we used in situ hybridization to visualize cadherin expression in brains of two mouse models for AD (APP/PS1 and APP23).

resultsA variable number of plaques was detected in transgenic brain sections, depending on the probe used. Our first impression was that the cadherin probes visualized specific mRNA expression in plaques and that endogenous staining was unaffected. However, control experiments revealed unspecific binding with sense probes. Further experiments with variations in probe length, probe sequence, molecular tag and experimental procedure lead us to conclude that cRNA probes bind generally and in an unspecific manner to plaques.

conclusionsWe demonstrate unspecific binding of cRNA probes to plaques in two mouse models for AD. The widespread and general staining of the plaques prevented us from studying endogenous expression of cadherins in transgenic brain by in situ hybridization.

Indexed as

Alzheimer DiseaseAnimalsCadherinsDisease Models, AnimalFemaleGene Expression RegulationIn Situ HybridizationMaleMice, Inbred C57BLMice, TransgenicPlaque, AmyloidRNA, ComplementaryRNA ProbesStaining and LabelingCadherinsRNA, ComplementaryRNA ProbesAlzheimer’s diseaseAPP23APP/PS1CadherinCell adhesionIn situ hybridizationPlaquesUnspecific binding

Identifiers

PMID27978824
PMCPMC5159973
OpenAlexW2552716239

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.