Evidence map›Paper›PMID 27977021›Full record

ArticleNature protocols2017

Correlated fluorescence microscopy and cryo-electron tomography of virus-infected or transfected mammalian cells.

Cheri M Hampton, Joshua D Strauss, Zunlong Ke, Rebecca S Dillard, Jason E Hammonds, Eric Alonas, Tanay M Desai, Mariana Marin, Rachel E Storms, Fredrick Leon and 4 more

Abstract read
In one paragraph

Article in Nature protocols, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed.

  1. Review
  2. Challenges and limitations for live cell imaging in extreme cold.Methods and applications in fluorescence · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Recent advances in correlative cryo-light and electron microscopy.Current opinion in structural biology · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Integrative Approaches to Study Virus Structures.Sub-cellular biochemistry · 2024
    Review
  14. Review
  15. Handling Difficult Cryo-ET Samples: A Study with Primary Neurons from Drosophila melanogaster.Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Label-free microscopy for virus infections.Microscopy (Oxford, England) · 2023
    Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Cheri M HamptonDivision of Infectious Diseases, Department of Pediatrics, Emory University School of Medicine, Children's Healthcare of Atlanta, Atlanta, Georgia, USA.ORCID http://orcid.org/0000-0003-0069-8712
Joshua D StraussDivision of Infectious Diseases, Department of Pediatrics, Emory University School of Medicine, Children's Healthcare of Atlanta, Atlanta, Georgia, USA.
Zunlong KeSchool of Biology, Georgia Institute of Technology, Atlanta, Georgia, USA.
Rebecca S DillardDivision of Infectious Diseases, Department of Pediatrics, Emory University School of Medicine, Children's Healthcare of Atlanta, Atlanta, Georgia, USA.
Jason E HammondsDivision of Infectious Diseases, Department of Pediatrics, Emory University School of Medicine, Children's Healthcare of Atlanta, Atlanta, Georgia, USA.
Eric AlonasWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, USA.
Tanay M DesaiDivision of Infectious Diseases, Department of Pediatrics, Emory University School of Medicine, Children's Healthcare of Atlanta, Atlanta, Georgia, USA.
Mariana MarinDivision of Infectious Diseases, Department of Pediatrics, Emory University School of Medicine, Children's Healthcare of Atlanta, Atlanta, Georgia, USA.
Rachel E StormsDivision of Infectious Diseases, Department of Pediatrics, Emory University School of Medicine, Children's Healthcare of Atlanta, Atlanta, Georgia, USA.
Fredrick LeonDivision of Infectious Diseases, Department of Pediatrics, Emory University School of Medicine, Children's Healthcare of Atlanta, Atlanta, Georgia, USA.
Gregory B MelikyanDivision of Infectious Diseases, Department of Pediatrics, Emory University School of Medicine, Children's Healthcare of Atlanta, Atlanta, Georgia, USA.
Philip J SantangeloWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, USA.
Paul W SpearmanDivision of Infectious Diseases, Department of Pediatrics, Emory University School of Medicine, Children's Healthcare of Atlanta, Atlanta, Georgia, USA.
Elizabeth R WrightDivision of Infectious Diseases, Department of Pediatrics, Emory University School of Medicine, Children's Healthcare of Atlanta, Atlanta, Georgia, USA.

Funding

Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Carlos del Rio · 2002 to 2026
$74.0M
The Mechanism of Arenavirus Entry into CellsR01AI053668 · NIAID · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI MELIKIAN, GREGORY B · 2003 to 2023
$7.4M
BIOPHYSICS OF PROTEIN-MEDIATED MEMBRANE FUSIONR01GM054787 · NIGMS · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI MELIKIAN, GREGORY B · 2000 to 2018
$6.5M
Role of VPU in Retroviral Particle AssemblyR01AI058828 · NIAID · VANDERBILT UNIVERSITY · PI SPEARMAN, PAUL W. · 2004 to 2015
$3.6M
Single RNA sensitive probes for studying viral replication and buddingR01GM094198 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI SANTANGELO, PHILIP J · 2010 to 2014
$2.0M
Structural Investigations Of Macromolecular Complexes Critical To hRSV Life CycleR01GM114561 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI SANTANGELO, PHILIP J, WRIGHT, ELIZABETH R · 2016 to 2019
$1.6M
Structure and Function of Prokaryotic Appendages by Cryo-Electron TomographyR01GM104540 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI WRIGHT, ELIZABETH R · 2013 to 2017
$1.4M
Structural studies of respiratory syncytial virusR21AI101775 · NIAID · EMORY UNIVERSITY · PI WRIGHT, ELIZABETH R · 2013 to 2014
$429k
Structural analysis of tetherin-mediated HIV restrictionF32GM112517 · NIGMS · EMORY UNIVERSITY · PI STRAUSS, JOSHUA · 2014 to 2015
$106k
NIAID NIH HHS P30 AI050409NIAID NIH HHS R01 AI053668NIAID NIH HHS R01 AI058828NIAID NIH HHS R21 AI101775NIGMS NIH HHS F32 GM112517NIGMS NIH HHS R01 GM054787NIGMS NIH HHS R01 GM094198NIGMS NIH HHS R01 GM104540NIGMS NIH HHS R01 GM114561
6 · The paper itself

Abstract

Correlative light and electron microscopy (CLEM) combines spatiotemporal information from fluorescence light microscopy (fLM) with high-resolution structural data from cryo-electron tomography (cryo-ET). These technologies provide opportunities to bridge knowledge gaps between cell and structural biology. Here we describe our protocol for correlated cryo-fLM, cryo-electron microscopy (cryo-EM), and cryo-ET (i.e., cryo-CLEM) of virus-infected or transfected mammalian cells. Mammalian-derived cells are cultured on EM substrates, using optimized conditions that ensure that the cells are spread thinly across the substrate and are not physically disrupted. The cells are then screened by fLM and vitrified before acquisition of cryo-fLM and cryo-ET images, which is followed by data processing. A complete session from grid preparation through data collection and processing takes 5-15 d for an individual experienced in cryo-EM.

Indexed as

TransfectionCell LineCryoelectron MicroscopyHerpesvirus 1, HumanHIV-1HumansMicroscopy, Fluorescence

Identifiers

PMID27977021
PMCPMC5385890

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.