Evidence map›Paper›PMID 27976751›Full record

ArticleWellcome open research2016

Hepitopes: A live interactive database of HLA class I epitopes in hepatitis B virus.

Sheila Lumley, Howard Noble, Martin J Hadley, Liz Callow, Amna Malik, Yi Yi Chua, Owen J Duffey, Natalia Grolmusova, Arvind Kumar, Samuel Ravenscroft and 7 more

Open access · goldAbstract read
In one paragraph

Article in Wellcome open research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
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  12. Therapeutic vaccination for treatment of chronic hepatitis B.Clinical and experimental immunology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 2 countries.

Sheila LumleyDepartment of Infectious Diseases and Microbiology, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK.
Howard NobleIT Services, University of Oxford, Oxford, UK.
Martin J HadleyIT Services, University of Oxford, Oxford, UK.
Liz CallowBodleian Health Care Libraries, University of Oxford, John Radcliffe Hospital, Oxford, UK.
Amna MalikDepartment of Paediatrics, University of Oxford, Oxford, UK.
Yi Yi ChuaUniversity of Oxford Medical School, John Radcliffe Hospital, Oxford, UK.
Owen J DuffeyUniversity of Oxford Medical School, John Radcliffe Hospital, Oxford, UK.
Natalia GrolmusovaUniversity of Oxford Medical School, John Radcliffe Hospital, Oxford, UK.
Arvind KumarUniversity of Oxford Medical School, John Radcliffe Hospital, Oxford, UK.
Samuel RavenscroftUniversity of Oxford Medical School, John Radcliffe Hospital, Oxford, UK.
Jonathan I SpencerUniversity of Oxford Medical School, John Radcliffe Hospital, Oxford, UK.
Christoph Neumann-HaefelinDepartment of Medicine II, University Hospital Freiburg, Freiburg, Germany.
Robert ThimmeDepartment of Medicine II, University Hospital Freiburg, Freiburg, Germany.
Monique AnderssonDepartment of Infectious Diseases and Microbiology, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK.
Paul KlenermanDepartment of Infectious Diseases and Microbiology, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK.ORCID 0000-0003-4307-9161
Eleanor BarnesNuffield Department of Experimental Medicine, University of Oxford, Oxford, UK.
Philippa C MatthewsDepartment of Infectious Diseases and Microbiology, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK.
John Radcliffe Hospital · GBUniversity of Oxford · GBUniversity Medical Center Freiburg · DE

Funding

Medical Research Council MR/K010239/1Wellcome Trust 109965/Z/15/ZWellcome Trust 110110
6 · The paper itself

Abstract

Increased clinical and scientific scrutiny is being applied to hepatitis B virus (HBV), with focus on the development of new therapeutic approaches, ultimately aiming for cure. Defining the optimum natural CD8+ T cell immune responses that arise in HBV, mediated by HLA class I epitope presentation, may help to inform novel immunotherapeutic strategies. Therefore, we have set out to develop a comprehensive database of these epitopes in HBV, coined 'Hepitopes'. This undertaking has its foundations in a systematic literature review to identify the sites and sequences of all published class I epitopes in HBV. We also collected information regarding the methods used to define each epitope, and any reported associations between an immune response to this epitope and disease outcome. The results of this search have been collated into a new open-access interactive database that is available at http://www.expmedndm.ox.ac.uk/hepitopes. Over time, we will continue to refine and update this resource, as well as inviting contributions from others in the field to support its development. This unique new database is an important foundation for ongoing investigations into the nature and impact of the CD8+ T cell response to HBV.

Indexed as

CD8+ T celldatabaseepitopeHBVHepatitis B VirusHLA class I

Identifiers

PMID27976751
PMCPMC5142601
OpenAlexW2554219702

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.