Evidence map›Paper›PMID 27974812›Full record

ArticleJournal of human genetics2017

Association of a single nucleotide polymorphism upstream of ICOS with Japanese autoimmune hepatitis type 1.

Takashi Higuchi, Shomi Oka, Hiroshi Furukawa, Minoru Nakamura, Atsumasa Komori, Seigo Abiru, Shinya Nagaoka, Satoru Hashimoto, Atsushi Naganuma, Noriaki Naeshiro and 14 more

Abstract read
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In one paragraph

Article in Journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Current issues in molecular biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 5 institutions in 1 country.

Takashi HiguchiMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Shomi OkaMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Hiroshi FurukawaMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Minoru NakamuraDepartment of Hepatology, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki, Japan.
Atsumasa KomoriClinical Research Center, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Seigo AbiruNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Shinya NagaokaNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Satoru HashimotoNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Atsushi NaganumaNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Noriaki NaeshiroNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Kaname YoshizawaNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Masaaki ShimadaNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Hideo NishimuraNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Minoru TomizawaNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Masahiro KikuchiNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Fujio MakitaNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Haruhiro YamashitaNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Keisuke ArioNHO-AIH study group, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Hiroshi YatsuhashiClinical Research Center, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Shigeto TohmaClinical Research Center for Allergy and Rheumatology, National Hospital Organization Sagamihara National Hospital, Sagamihara, Japan.
Aya KawasakiMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Hiromasa OhiraDepartment of Gastroenterology and Rheumatology, Fukushima Medical University School of Medicine, Fukushima, Japan.
Naoyuki TsuchiyaMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Kiyoshi MigitaClinical Research Center, National Hospital Organization Nagasaki Medical Center, Omura, Japan.
Nagasaki Medical Center · JPUniversity of Tsukuba · JPFukushima Medical University · JPNagasaki University · JPNational Sagamihara Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autoimmune hepatitis (AIH) is an uncommon chronic autoimmune liver disease. Several studies reported the association of polymorphisms between CD28, CTLA4 and ICOS gene cluster in 2q33.2 with autoimmune or inflammatory diseases. The previous genome-wide association study on type 1 AIH in a European population has reported a risk G allele of a single nucleotide polymorphism (SNP), rs4325730, in this region. Here, we conducted an association study of this SNP with type 1 AIH in a Japanese population, as a replication study.An association study of rs4325730 was conducted in 343 Japanese AIH patients and 315 controls.We found that rs4325730 is associated with AIH (P=0.0173, odds ratio (OR) 1.30, 95% confidence interval (CI) 1.05-1.62, under the allele model for G allele, P=0.0070, OR 1.62, 95% CI 1.14-2.31, under the dominant model for G allele). This SNP was strongly associated with definite AIH (P=0.0134, OR 1.36, 95% CI 1.07-1.74; under allele model for G, P=0.0035, OR 1.85, 95% CI 1.22-2.81, under dominant model for G).This is the first replication association study of rs4325730 upstream of ICOS with AIH in the Japanese population and rs4325730G is a risk allele.

Indexed as

Genetic Predisposition to DiseaseAgedAllelesAsian PeopleFemaleGenome-Wide Association StudyGenotypeHepatitis, AutoimmuneHumansInducible T-Cell Co-Stimulator ProteinMaleMiddle AgedPolymorphism, Single NucleotideWhite PeopleICOS protein, humanInducible T-Cell Co-Stimulator Protein

Identifiers

PMID27974812
OpenAlexW2566969965

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.