Evidence map›Paper›PMID 27966672›Full record

ArticleScientific reports2016

Biology of archaea from a novel family Cuniculiplasmataceae (Thermoplasmata) ubiquitous in hyperacidic environments.

Olga V Golyshina, Ilya V Kublanov, Hai Tran, Alexei A Korzhenkov, Heinrich Lünsdorf, Taras Y Nechitaylo, Sergey N Gavrilov, Stepan V Toshchakov, Peter N Golyshin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 38 citations in OpenAlex.

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  18. Diversity of "Genes · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Olga V GolyshinaSchool of Biological Sciences, Bangor University, Deiniol Rd, Bangor, LL57 2UW, UK.
Ilya V KublanovWinogradsky Institute of Microbiology, Research Center for Biotechnology Russian Academy of Sciences, Prospect 60-Letiya Oktyabrya 7/2, Moscow, 117312, Russia.
Hai TranSchool of Biological Sciences, Bangor University, Deiniol Rd, Bangor, LL57 2UW, UK.
Alexei A KorzhenkovImmanuel Kant Baltic Federal University, 236040 Kaliningrad, Russia.
Heinrich LünsdorfCentral Unit of Microscopy, Helmholtz Centre for Infection Research, Inhoffenstrasse 7, Braunschweig, 38124, Germany.
Taras Y NechitayloInsect Symbiosis Research Group, Max Planck Institute for Chemical Ecology, Hans-Knöll-Strasse 8, Jena, 07745, Germany.
Sergey N GavrilovWinogradsky Institute of Microbiology, Research Center for Biotechnology Russian Academy of Sciences, Prospect 60-Letiya Oktyabrya 7/2, Moscow, 117312, Russia.
Stepan V ToshchakovImmanuel Kant Baltic Federal University, 236040 Kaliningrad, Russia.
Peter N GolyshinSchool of Biological Sciences, Bangor University, Deiniol Rd, Bangor, LL57 2UW, UK.
Bangor University · GBImmanuel Kant Baltic Federal University · RURussian Academy of Sciences · RUHelmholtz Centre for Infection Research · DEMax Planck Institute for Chemical Ecology · DE

Funding

Biotechnology and Biological Sciences Research Council BB/M029085/1
6 · The paper itself

Abstract

The order Thermoplasmatales (Euryarchaeota) is represented by the most acidophilic organisms known so far that are poorly amenable to cultivation. Earlier culture-independent studies in Iron Mountain (California) pointed at an abundant archaeal group, dubbed 'G-plasma'. We examined the genomes and physiology of two cultured representatives of a Family Cuniculiplasmataceae, recently isolated from acidic (pH 1-1.5) sites in Spain and UK that are 16S rRNA gene sequence-identical with 'G-plasma'. Organisms had largest genomes among Thermoplasmatales (1.87-1.94 Mbp), that shared 98.7-98.8% average nucleotide identities between themselves and 'G-plasma' and exhibited a high genome conservation even within their genomic islands, despite their remote geographical localisations. Facultatively anaerobic heterotrophs, they possess an ancestral form of A-type terminal oxygen reductase from a distinct parental clade. The lack of complete pathways for biosynthesis of histidine, valine, leucine, isoleucine, lysine and proline pre-determines the reliance on external sources of amino acids and hence the lifestyle of these organisms as scavengers of proteinaceous compounds from surrounding microbial community members. In contrast to earlier metagenomics-based assumptions, isolates were S-layer-deficient, non-motile, non-methylotrophic and devoid of iron-oxidation despite the abundance of methylotrophy substrates and ferrous iron in situ, which underlines the essentiality of experimental validation of bioinformatic predictions.

Indexed as

EcosystemAcidsArchaeal ProteinsCaliforniaEuryarchaeotaGenome, ArchaealGenomicsGeographyHydrogen-Ion ConcentrationMicroscopy, ElectronPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNASpainThermoplasmalesUnited KingdomAcidsArchaeal ProteinsRNA, Ribosomal, 16S

Identifiers

PMID27966672
PMCPMC5155288
OpenAlexW2566623811

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.