Evidence map›Paper›PMID 27966078›Full record

ArticleMolecular neurobiology2018

Analysis of piRNA-Like Small Non-coding RNAs Present in Axons of Adult Sensory Neurons.

Monichan Phay, Hak Hee Kim, Soonmoon Yoo

Open access · greenAbstract read
In one paragraph

Article in Molecular neurobiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
7.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 46 citations in OpenAlex.

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  15. Specific PIWI-Interacting RNAs and Related Small Noncoding RNAs Are Associated With Ovarian Aging in Ames Dwarf (df/df) Mice.The journals of gerontology. Series A, Biological sciences and medical sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Monichan PhayNemours Biomedical Research, Alfred I duPont Hospital for Children, Wilmington, DE, 19803, USA.
Hak Hee KimNemours Biomedical Research, Alfred I duPont Hospital for Children, Wilmington, DE, 19803, USA.
Soonmoon YooNemours Biomedical Research, Alfred I duPont Hospital for Children, Wilmington, DE, 19803, USA. yoo@medsci.udel.edu.ORCID 0000-0002-1645-6809
Alfred I. duPont Hospital for Children · US

Funding

Predictive Modeling & Optimal Control Framework for Model-Based Epidemic Response in DelawareP20GM103446 · NIGMS · UNIVERSITY OF DELAWARE · PI Anjana Narayan Bhat · 2012 to 2026
$67.2M
Subproject Title: Clinical Research Education, Mentoring and Career Development CoreU54GM104941 · NIGMS · UNIVERSITY OF DELAWARE · PI LEE M PACHTER · 2013 to 2026
$60.5M
Center for Pediatric ResearchP20GM103464 · NIGMS · NEMOURS CHILDREN'S HOSPITAL, DELAWARE · PI SHAFFER, THOMAS H · 2012 to 2014
$5.6M
Center for Pediatric Research Pilot ProgramP30GM114736 · NIGMS · NEMOURS CHILDREN'S HOSPITAL, DELAWARE · PI SHAFFER, THOMAS H · 2015 to 2019
$5.1M
Function of piLRNA/MIWI pathways in neuronal axon growth and regenerationR21NS099959 · NINDS · NEMOURS CHILDREN'S HOSPITAL, DELAWARE · PI YOO, SOONMOON · 2017 to 2018
$381k
Profiling and characterizing axonal precursor micro RNAs in regenerating nerveR21NS085691 · NINDS · NEMOURS CHILDREN'S HOSPITAL, DELAWARE · PI YOO, SOONMOON · 2013 to 2014
$373k
NIGMS NIH HHS P20 GM103446NIGMS NIH HHS P20-GM103446NIGMS NIH HHS P20 GM103464NIGMS NIH HHS P20-GM103464NIGMS NIH HHS P30 GM114736NIGMS NIH HHS P30-GM114736NIGMS NIH HHS U54 GM104941NIH HHS U54 GM104941NINDS NIH HHS R21 NS085691NINDS NIH HHS R21-NS085691NINDS NIH HHS R21 NS099959
6 · The paper itself

Abstract

Small non-coding RNAs (sncRNAs) have been shown to play pivotal roles in spatiotemporal-specific gene regulation that is linked to many different biological functions. PIWI-interacting RNAs (piRNAs), typically 25-34-nucleotide long, are originally identified and thought to be restricted in germline cells. However, recent studies suggest that piRNAs associate with neuronal PIWI proteins, contributing to neuronal development and function. Here, we identify a cohort of piRNA-like sncRNAs (piLRNAs) in rat sciatic nerve axoplasm and directly contrast temporal changes of piLRNA levels in the nerve following injury, as compared with those in an uninjured nerve using deep sequencing. We find that 32 of a total of 53 annotated piLRNAs show significant changes in their levels in the regenerating nerve, suggesting that individual axonal piLRNAs may play important regulatory roles in local messenger RNA (mRNA) translation during regeneration. Bioinformatics and biochemical analyses show that these piLRNAs carry characteristic features of mammalian piRNAs, including sizes, a sequence bias for uracil at the 5'-end and a 2'-O-methylation at the 3'-end. Their axonal expression is directly visualized by fluorescence in situ hybridization in cultured dorsal root ganglion neurons as well as immunoprecipitation with MIWI. Further, depletion of MIWI protein using RNAi from cultured sensory neurons increases axon growth rates, decreases axon retraction after injury, and increases axon regrowth after injury. All these data suggest more general roles for MIWI/piLRNA pathway that could confer a unique advantage for coordinately altering the population of proteins generated in growth cones and axons of neurons by targeting mRNA cohorts.

Indexed as

AgingAnimalsArgonaute ProteinsAxonsGanglia, SpinalGene Expression RegulationMaleRats, Sprague-DawleyReproducibility of ResultsRNA, Small InterferingRNA, Small UntranslatedSciatic NerveSensory Receptor CellsTime FactorsArgonaute ProteinsRNA, Small InterferingRNA, Small UntranslatedAxon growthIntra-axonal translationNeuronal piRNARegenerating nerveSmall non-coding RNASmall RNA sequencing

Identifiers

PMID27966078
PMCPMC5901696
OpenAlexW2561523855

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.