Evidence map›Paper›PMID 27965463›Full record

ArticleOncotarget2017

Ameloblastoma RNA profiling uncovers a distinct non-coding RNA signature.

Haleh Davanian, Anangi Balasiddaiah, Robert Heymann, Magnus Sundström, Poppy Redenström, Mikael Silfverberg, David Brodin, Matti Sällberg, Sven Lindskog, Carina Kruger Weiner and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
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  6. Epigenetic alterations in ameloblastomas: A literature review.Journal of clinical and experimental dentistry · 2021
    Review
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  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Haleh DavanianDepartment of Dental Medicine, Karolinska Institutet, Huddinge, Sweden.
Anangi BalasiddaiahDepartment of Dental Medicine, Karolinska Institutet, Huddinge, Sweden.
Robert HeymannDepartment of Dental Medicine, Karolinska Institutet, Huddinge, Sweden.
Magnus SundströmRudbeck Laboratory, Molecular Pathology Unit, Department of Pathology, Uppsala University Hospital and Department of Immunology, Genetics and Pathology, Uppsala University, Sweden.
Poppy RedenströmDepartment of Dental Medicine, Karolinska Institutet, Huddinge, Sweden.
Mikael SilfverbergDepartment of Dental Medicine, Karolinska Institutet, Huddinge, Sweden.
David BrodinDepartment of Biosciences and Nutrition, Bioinformatics and Expression Analysis SciLifeLab, Karolinska Institutet, Huddinge, Sweden.
Matti SällbergDepartment of Laboratory Medicine, Karolinska Institutet, Huddinge, Sweden.
Sven LindskogDepartment of Oncology and Pathology, Karolinska Institutet, Huddinge, Sweden.
Carina Kruger WeinerDepartment of Dental Medicine, Karolinska Institutet, Huddinge, Sweden.
Margaret ChenDepartment of Dental Medicine, Karolinska Institutet, Huddinge, Sweden.
Karolinska Institutet · SEKarolinska University Hospital · SEScience for Life Laboratory · SEUppsala University Hospital · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ameloblastoma of the jaws remains the top difficult to treat odontogenic tumour and has a high recurrence rate. New evidence suggests that non-coding RNAs (ncRNAs) play a critical role in tumourgenesis and prognosis of cancer. However, ameloblastoma ncRNA expression data is lacking. Here we present the first report of ameloblastoma ncRNA signatures. A total of 95 ameloblastoma cases and a global array transcriptome technology covering > 285.000 full-length transcripts were used in this two-step analysis. The analysis first identified in a test cohort 31 upregulated ameloblastoma-associated ncRNAs accompanied by signalling pathways of cancer, spliceosome, mRNA surveillance and Wnt. Further validation in an independent cohort points out the long non-coding (lncRNAs) and small nucleolar RNA (snoRNAs): LINC340, SNORD116-25, SNORA11, SNORA21, SNORA47 and SNORA65 as a distinct ncRNA signature of ameloblastoma. Importantly, the presence of these ncRNAs was independent of BRAF-V600E and SMO-L412F mutations, histology type or tumour location, but was positively correlated with the tumour size. Taken together, this study shows a systematic investigation of ncRNA expression of ameloblastoma, and illuminates new diagnostic and therapeutic targets for this invasive odontogenic tumour.

Indexed as

AdultAgedAmeloblastomaFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansJaw NeoplasmsMaleMiddle AgedOligonucleotide Array Sequence AnalysisRNA, UntranslatedSignal TransductionRNA, Untranslatedameloblastomabiomarkersgene expression analysisncRNAtranscriptome

Identifiers

PMID27965463
PMCPMC5354851
OpenAlexW2560053841

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.