Evidence map›Paper›PMID 27965293›Full record

ArticleGenome research2017

Reconstructing genetic history of Siberian and Northeastern European populations.

Emily H M Wong, Andrey Khrunin, Larissa Nichols, Dmitry Pushkarev, Denis Khokhrin, Dmitry Verbenko, Oleg Evgrafov, James Knowles, John Novembre, Svetlana Limborska and 1 more

Abstract read
In one paragraph

Article in Genome research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  7. A novel splice-affectingThe Lancet regional health. Europe · 2023
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  10. Placing Ancient DNA Sequences into Reference Phylogenies.Molecular biology and evolution · 2022
    Article
  11. Article
  12. Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Review
  14. Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Article
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  17. Human population dynamics andScience advances · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Emily H M WongDivision of Bioinformatics, Department of Preventive Medicine, University of Southern California, Keck School of Medicine, Los Angeles, California 90089, USA.
Andrey KhruninDepartment of Molecular Bases of Human Genetics, Institute of Molecular Genetics, Russian Academy of Sciences, Moscow, 123182 Russian Federation.
Larissa NicholsDepartment of Molecular Bases of Human Genetics, Institute of Molecular Genetics, Russian Academy of Sciences, Moscow, 123182 Russian Federation.
Dmitry PushkarevIllumina, Incorporated, Advanced Research Group, San Diego, California 92122, USA.
Denis KhokhrinDepartment of Molecular Bases of Human Genetics, Institute of Molecular Genetics, Russian Academy of Sciences, Moscow, 123182 Russian Federation.
Dmitry VerbenkoDepartment of Molecular Bases of Human Genetics, Institute of Molecular Genetics, Russian Academy of Sciences, Moscow, 123182 Russian Federation.
Oleg EvgrafovDepartment of Psychiatry and Behavioral Sciences, Keck School of Medicine, Zilkha Neurogenetic Institute, University of Southern California, California 90033, USA.
James KnowlesDepartment of Psychiatry and Behavioral Sciences, Keck School of Medicine, Zilkha Neurogenetic Institute, University of Southern California, California 90033, USA.
John NovembreDepartment of Human Genetics, University of Chicago, Chicago, Illinois 60637, USA.
Svetlana LimborskaDepartment of Molecular Bases of Human Genetics, Institute of Molecular Genetics, Russian Academy of Sciences, Moscow, 123182 Russian Federation.
Anton ValouevDivision of Bioinformatics, Department of Preventive Medicine, University of Southern California, Keck School of Medicine, Los Angeles, California 90089, USA.

Funding

Haplotype-based analysis methods for population genomicsR01HG007089 · NHGRI · UNIVERSITY OF CHICAGO · PI NOVEMBRE, JOHN · 2013 to 2017
$1.5M
NHGRI NIH HHS R01 HG007089
6 · The paper itself

Abstract

Siberia and Northwestern Russia are home to over 40 culturally and linguistically diverse indigenous ethnic groups, yet genetic variation and histories of peoples from this region are largely uncharacterized. We present deep whole-genome sequencing data (∼38×) from 28 individuals belonging to 14 distinct indigenous populations from that region. We combined these data sets with additional 32 modern-day and 46 ancient human genomes to reconstruct genetic histories of several indigenous Northern Eurasian populations. We found that Siberian and East Asian populations shared 38% of their ancestry with a 45,000-yr-old Ust'-Ishim individual who was previously believed to have no modern-day descendants. Western Siberians trace 57% of their ancestry to ancient North Eurasians, represented by the 24,000-yr-old Siberian Mal'ta boy MA-1. Eastern Siberian populations formed a distinct sublineage that separated from other East Asian populations ∼10,000 yr ago. In addition, we uncovered admixtures between Siberians and Eastern European hunter-gatherers from Samara, Karelia, Hungary, and Sweden (from 8000-6600 yr ago); Yamnaya people (5300-4700 yr ago); and modern-day Northeastern Europeans. Our results provide new insights into genetic histories of Siberian and Northeastern European populations and evidence of ancient gene flow from Siberia into Europe.

Indexed as

Genetics, PopulationGenome, HumanAsian PeopleDNA, MitochondrialEthnicityGene FlowGenetic VariationHaplotypesHigh-Throughput Nucleotide SequencingHumansPhylogeographyRussiaSiberiaWhite PeopleDNA, Mitochondrial

Identifiers

PMID27965293
PMCPMC5204334

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.