Evidence map›Paper›PMID 27965093›Full record

ArticleBiochemical and biophysical research communications2017

Reversible aggregation of HIV-1 Gag proteins mediated by nucleic acids.

Zhilin Chen, Wei Cheng

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 90% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Zhilin ChenDepartment of Pharmaceutical Sciences, University of Michigan, Ann Arbor, MI, USA.
Wei ChengDepartment of Pharmaceutical Sciences, University of Michigan, Ann Arbor, MI, USA; Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI, USA; Department of Biophysics, University of Michigan, Ann Arbor, MI, USA. Electronic address: chengwe@med.umich.edu.
University of Michigan · US

Funding

Single Cell with One Particle Entry (SCOPE) for Study of HIV InfectionDP2OD008693 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHENG, WEI · 2011 to 2012
$2.5M
NIH HHS DP2 OD008693
6 · The paper itself

Abstract

HIV-1 Gag protein is the major structural protein for the assembly of virion particles. Although studies have been carried out using partially purified Gag proteins to investigate the mechanisms of viral particle assembly, the outcomes of an assembly reaction remain controversial. Here we have developed an improved procedure for purification of several untagged retroviral Gag proteins from E. coli to more than 95% purity and characterized Gag assembly in solution. We found that HIV-1 Gag proteins can undergo nucleic acid-dependent aggregation with several unexpected features: (1) they form spherical particles that are as large as microns in diameter; (2) the size of the aggregates vary with the molar ratio between nucleic acids and proteins, with the average size of these particles reaching maximal at a molar ratio of 1:2 between nucleic acids and proteins; and (3) these particles can be efficiently disassembled simply upon addition of excess nucleic acids into the solution, suggesting the presence of an ordered assembly. Single-stranded DNA oligos that are 10 nucleotides or shorter do not support the formation of these particles. Furthermore, the matrix domain of the Gag protein dramatically facilitates the formation of these aggregates. These studies uncover a previously uncharacterized pathway of HIV Gag assembly in vitro, and have implications for HIV-1 Gag assembly and pathogenesis in vivo.

Indexed as

Cell DeathDNADNA, Single-StrandedElectrophoresis, Polyacrylamide GelEscherichia coliFlow Cytometrygag Gene Products, Human Immunodeficiency VirusHIV-1Hydrogen-Ion ConcentrationMicroscopy, ElectronNucleic AcidsNucleotidesRNA, TransferTemperatureVirionVirus AssemblyDNADNA, Single-Strandedgag Gene Products, Human Immunodeficiency VirusNucleic AcidsNucleotidesRNA, TransferAggregationNucleic acidsProtein purificationRetrovirus

Identifiers

PMID27965093
PMCPMC5237607
OpenAlexW2560810257

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.