Evidence map›Paper›PMID 27959942›Full record

ArticlePloS one2016

Structure-Function Analysis of the Transmembrane Protein AmpG from Pseudomonas aeruginosa.

Peizhen Li, Jun Ying, Guangjian Yang, Aifang Li, Jian Wang, Junwan Lu, Junrong Wang, Teng Xu, Huiguang Yi, Kewei Li and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Class C β-Lactamases: Molecular Characteristics.Clinical microbiology reviews · 2022
    Review
  4. Effects of NaturalMolecules (Basel, Switzerland) · 2022
    Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. The Structure ofThe Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Peizhen LiSchool of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Wenzhou, China.
Jun YingSchool of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Wenzhou, China.
Guangjian YangSchool of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Wenzhou, China.
Aifang LiSchool of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Wenzhou, China.
Jian WangSchool of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Wenzhou, China.
Junwan LuSchool of Medicine, Lishui College, Lishui, China.
Junrong WangWenling Women's & Children's Hospital, Wenling, China.
Teng XuSchool of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Wenzhou, China.
Huiguang YiSchool of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Wenzhou, China.
Kewei LiSchool of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Wenzhou, China.
Shouguang JinDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida, United States of America.
Qiyu BaoSchool of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Wenzhou, China.
Kaibo ZhangSchool of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Wenzhou, China.
Wenzhou Medical University · CNLishui University · CNUniversity of Florida · US

Funding

Countering beta-lactam resistance in Pseudomonas aeruginosaR21AI119043 · NIAID · UNIVERSITY OF FLORIDA · PI JIN, SHOUGUANG, SCAMPAVIA, LOUIS DANIEL · 2015 to 2016
$496k
NIAID NIH HHS R21 AI119043
6 · The paper itself

Abstract

AmpG is a transmembrane protein with permease activity that transports meuropeptide from the periplasm to the cytoplasm, which is essential for the induction of the ampC encoding β-lactamase. To obtain new insights into the relationship between AmpG structure and function, comparative genomics analysis, secondary and tertiary structure modeling, site-directed mutational analyses and genetic complementation experiments were performed in this study. AmpGs from different genera of bacteria (Escherichia coli, Vibrio cholerae and Acinetobacter baumannii) could complement AmpG function in Pseudomonas aeruginosa. The minimal inhibitory concentration (MIC) to ampicillin is 512 μg/ml for wild type strain PAO1, while it is 32 μg/ml for an ampG deletion mutant strain (PAO1ΔampG) with a corresponding decrease in the activity of the ampC-encoded β-lactamase. Site-directed mutagenesis of conserved AmpG residues (G29, A129, Q131 and A197) resulted in a loss of function, resulting in a loss of resistance to ampicillin in PAO1ΔampG. The G29A, G29V, A129T, A129V, A129D, A197S and A197D mutants had lower resistance to ampicillin and significantly decreased activity of the AmpC β-lactamase. The G29A, G29V, A129V, A197S and A197D mutants had decreased ampG mRNA transcript levels. The A129T and A129D mutants had normal ampG mRNA transcript levels, but the function of the protein was drastically reduced. Our experimental results demonstrate that the conserved amino acids played essential roles in maintaining the function of AmpG. Combined with the AmpG structural information, these critical amino acids can be targeted for the development of new anti-bacterial agents.

Indexed as

Quantitative Structure-Activity RelationshipAmino Acid MotifsBacterial ProteinsMembrane Transport ProteinsMutation, MissensePseudomonas aeruginosaAmpG protein, BacteriaBacterial ProteinsMembrane Transport Proteins

Identifiers

PMID27959942
PMCPMC5154545
OpenAlexW2563221447

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.